miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 31289 0.69 0.809563
Target:  5'- cACGugCUCGaauUCGGCGUCuuuuucaggguCGAACGCu -3'
miRNA:   3'- -UGUugGGGU---AGCUGCAGuu---------GCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 32324 0.68 0.856715
Target:  5'- aGCAGCCCCucagccaCGGCGUCcuUcAACGCc -3'
miRNA:   3'- -UGUUGGGGua-----GCUGCAGuuGcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 32539 0.74 0.519725
Target:  5'- aACAACaUCGUCGcCGUCAuCGGGCGCa -3'
miRNA:   3'- -UGUUGgGGUAGCuGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 33620 0.66 0.93385
Target:  5'- -gGACCCCAggGGCGcgAACGuccGACGCu -3'
miRNA:   3'- ugUUGGGGUagCUGCagUUGC---UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 36945 0.66 0.93385
Target:  5'- cGCAACucgugcacaCCgGUCGACGUUu-CGAACGa -3'
miRNA:   3'- -UGUUG---------GGgUAGCUGCAGuuGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 37380 0.66 0.922338
Target:  5'- cGCAccGCCgCCGUCGACuUC-ACGuuCGCa -3'
miRNA:   3'- -UGU--UGG-GGUAGCUGcAGuUGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 37725 0.66 0.939176
Target:  5'- --uACCggaCCGg-GGCGUCGugGAGCGCc -3'
miRNA:   3'- uguUGG---GGUagCUGCAGUugCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 39738 0.66 0.922338
Target:  5'- gGCGGCCCgCcugcUCGACGaCGgcgccuccuacACGGACGCc -3'
miRNA:   3'- -UGUUGGG-Gu---AGCUGCaGU-----------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 40311 0.67 0.90293
Target:  5'- gGC-ACUUCAUCGGCGUCAGUGAccACuGCu -3'
miRNA:   3'- -UGuUGGGGUAGCUGCAGUUGCU--UG-CG- -5'
19623 5' -50.9 NC_004686.1 + 41605 0.7 0.771735
Target:  5'- aACuACCCCAccgaaaUCGAaGUUGAgGAACGCg -3'
miRNA:   3'- -UGuUGGGGU------AGCUgCAGUUgCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 41657 0.73 0.607673
Target:  5'- aACAACUCCuggaCGACG-CAGCGAagaaggGCGCg -3'
miRNA:   3'- -UGUUGGGGua--GCUGCaGUUGCU------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 41770 1.13 0.00182
Target:  5'- cACAACCCCAUCGACGUCAACGAACGCg -3'
miRNA:   3'- -UGUUGGGGUAGCUGCAGUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 41825 0.66 0.916153
Target:  5'- -gGAgUUCAUCG-CGUCGAUGAACGa -3'
miRNA:   3'- ugUUgGGGUAGCuGCAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 43742 0.74 0.530491
Target:  5'- cGCAACCugggccgccgcgCCAUCGGCGUCGAacucgaaGAACGg -3'
miRNA:   3'- -UGUUGG------------GGUAGCUGCAGUUg------CUUGCg -5'
19623 5' -50.9 NC_004686.1 + 43744 0.66 0.916153
Target:  5'- gGCGguGCCCCAUugcccugaugUGGCaUCGGCGGAgGCu -3'
miRNA:   3'- -UGU--UGGGGUA----------GCUGcAGUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 43989 0.66 0.930516
Target:  5'- uACGACacaCCAcgcuuagCGGCGUUAgcacccaacccgauuGCGAACGCc -3'
miRNA:   3'- -UGUUGg--GGUa------GCUGCAGU---------------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49068 0.68 0.839288
Target:  5'- -gGACgCCC-UgGugGUCAGCGAgggagaGCGCg -3'
miRNA:   3'- ugUUG-GGGuAgCugCAGUUGCU------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 49312 0.66 0.922338
Target:  5'- -gGACCgaCGUgCGACGa-AGCGAACGCg -3'
miRNA:   3'- ugUUGGg-GUA-GCUGCagUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 50928 0.7 0.780913
Target:  5'- gACAACaCCCAcacggauUCGACGUCGuCG-GCGUu -3'
miRNA:   3'- -UGUUG-GGGU-------AGCUGCAGUuGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 51721 0.7 0.781925
Target:  5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3'
miRNA:   3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.