Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 52057 | 0.72 | 0.663618 |
Target: 5'- cGCAA-CCCAUCGcCGUgCAACGAuUGCa -3' miRNA: 3'- -UGUUgGGGUAGCuGCA-GUUGCUuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 52294 | 0.69 | 0.830232 |
Target: 5'- uCGGCCCCcUCGGCu---GCGAAUGCc -3' miRNA: 3'- uGUUGGGGuAGCUGcaguUGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 53071 | 0.67 | 0.895899 |
Target: 5'- cCAA-CCCAUUGAUGUCAGaccaauGCGCa -3' miRNA: 3'- uGUUgGGGUAGCUGCAGUUgcu---UGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 53209 | 0.66 | 0.916153 |
Target: 5'- cCGACUUUAUCGuucCGUCAGCGuuuuucAGCGCc -3' miRNA: 3'- uGUUGGGGUAGCu--GCAGUUGC------UUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 53334 | 0.67 | 0.895899 |
Target: 5'- uGCAACCCCAUC-AUGgguuuagugaUCcgcgacugcccgAACGGACGCu -3' miRNA: 3'- -UGUUGGGGUAGcUGC----------AG------------UUGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 53956 | 0.7 | 0.771735 |
Target: 5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3' miRNA: 3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 54153 | 0.74 | 0.541338 |
Target: 5'- gGCAACgCCAacgCGAUGUCGcgGCGAACaGCg -3' miRNA: 3'- -UGUUGgGGUa--GCUGCAGU--UGCUUG-CG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 54920 | 0.77 | 0.362747 |
Target: 5'- aACAAguUCUCGUCGugGaCGACGGACGCa -3' miRNA: 3'- -UGUU--GGGGUAGCugCaGUUGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 55253 | 0.69 | 0.791954 |
Target: 5'- uCAACCUCAUCGGCcaauaCGACGAGgGUu -3' miRNA: 3'- uGUUGGGGUAGCUGca---GUUGCUUgCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 55980 | 0.67 | 0.881013 |
Target: 5'- cCAACCCCucacugGUCGACcaCAGCGAcaACGg -3' miRNA: 3'- uGUUGGGG------UAGCUGcaGUUGCU--UGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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