miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 55980 0.67 0.881013
Target:  5'- cCAACCCCucacugGUCGACcaCAGCGAcaACGg -3'
miRNA:   3'- uGUUGGGG------UAGCUGcaGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 55253 0.69 0.791954
Target:  5'- uCAACCUCAUCGGCcaauaCGACGAGgGUu -3'
miRNA:   3'- uGUUGGGGUAGCUGca---GUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 54920 0.77 0.362747
Target:  5'- aACAAguUCUCGUCGugGaCGACGGACGCa -3'
miRNA:   3'- -UGUU--GGGGUAGCugCaGUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 54153 0.74 0.541338
Target:  5'- gGCAACgCCAacgCGAUGUCGcgGCGAACaGCg -3'
miRNA:   3'- -UGUUGgGGUa--GCUGCAGU--UGCUUG-CG- -5'
19623 5' -50.9 NC_004686.1 + 53956 0.7 0.771735
Target:  5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3'
miRNA:   3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 53334 0.67 0.895899
Target:  5'- uGCAACCCCAUC-AUGgguuuagugaUCcgcgacugcccgAACGGACGCu -3'
miRNA:   3'- -UGUUGGGGUAGcUGC----------AG------------UUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 53209 0.66 0.916153
Target:  5'- cCGACUUUAUCGuucCGUCAGCGuuuuucAGCGCc -3'
miRNA:   3'- uGUUGGGGUAGCu--GCAGUUGC------UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 53071 0.67 0.895899
Target:  5'- cCAA-CCCAUUGAUGUCAGaccaauGCGCa -3'
miRNA:   3'- uGUUgGGGUAGCUGCAGUUgcu---UGCG- -5'
19623 5' -50.9 NC_004686.1 + 52294 0.69 0.830232
Target:  5'- uCGGCCCCcUCGGCu---GCGAAUGCc -3'
miRNA:   3'- uGUUGGGGuAGCUGcaguUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 52057 0.72 0.663618
Target:  5'- cGCAA-CCCAUCGcCGUgCAACGAuUGCa -3'
miRNA:   3'- -UGUUgGGGUAGCuGCA-GUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 51721 0.7 0.781925
Target:  5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3'
miRNA:   3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 50928 0.7 0.780913
Target:  5'- gACAACaCCCAcacggauUCGACGUCGuCG-GCGUu -3'
miRNA:   3'- -UGUUG-GGGU-------AGCUGCAGUuGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49312 0.66 0.922338
Target:  5'- -gGACCgaCGUgCGACGa-AGCGAACGCg -3'
miRNA:   3'- ugUUGGg-GUA-GCUGCagUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49068 0.68 0.839288
Target:  5'- -gGACgCCC-UgGugGUCAGCGAgggagaGCGCg -3'
miRNA:   3'- ugUUG-GGGuAgCugCAGUUGCU------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 43989 0.66 0.930516
Target:  5'- uACGACacaCCAcgcuuagCGGCGUUAgcacccaacccgauuGCGAACGCc -3'
miRNA:   3'- -UGUUGg--GGUa------GCUGCAGU---------------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 43744 0.66 0.916153
Target:  5'- gGCGguGCCCCAUugcccugaugUGGCaUCGGCGGAgGCu -3'
miRNA:   3'- -UGU--UGGGGUA----------GCUGcAGUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 43742 0.74 0.530491
Target:  5'- cGCAACCugggccgccgcgCCAUCGGCGUCGAacucgaaGAACGg -3'
miRNA:   3'- -UGUUGG------------GGUAGCUGCAGUUg------CUUGCg -5'
19623 5' -50.9 NC_004686.1 + 41825 0.66 0.916153
Target:  5'- -gGAgUUCAUCG-CGUCGAUGAACGa -3'
miRNA:   3'- ugUUgGGGUAGCuGCAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 41770 1.13 0.00182
Target:  5'- cACAACCCCAUCGACGUCAACGAACGCg -3'
miRNA:   3'- -UGUUGGGGUAGCUGCAGUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 41657 0.73 0.607673
Target:  5'- aACAACUCCuggaCGACG-CAGCGAagaaggGCGCg -3'
miRNA:   3'- -UGUUGGGGua--GCUGCaGUUGCU------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.