miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 22325 0.68 0.868339
Target:  5'- gACGGCCCCGccgguaauggcggguUCGGa-UCGGCGGGCGg -3'
miRNA:   3'- -UGUUGGGGU---------------AGCUgcAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 21798 0.74 0.541338
Target:  5'- cCAACCCCuGUCGGCGcgacgCAcuuGCGggUGCg -3'
miRNA:   3'- uGUUGGGG-UAGCUGCa----GU---UGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 21727 0.66 0.928237
Target:  5'- -gAACCCCGUCGGuCG-CcgUGAAgGCu -3'
miRNA:   3'- ugUUGGGGUAGCU-GCaGuuGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 21246 0.68 0.839288
Target:  5'- cCAGCCCCcgCGGCG-CGGaacAACGCc -3'
miRNA:   3'- uGUUGGGGuaGCUGCaGUUgc-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19629 0.72 0.674758
Target:  5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3'
miRNA:   3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19332 0.67 0.888591
Target:  5'- aGCAGCCCuCGcCGAacUCAGCGAGuCGUa -3'
miRNA:   3'- -UGUUGGG-GUaGCUgcAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 19222 0.68 0.856715
Target:  5'- cACGuCCUCAUCGGCGUCGA--AAUGUu -3'
miRNA:   3'- -UGUuGGGGUAGCUGCAGUUgcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 18862 0.67 0.895898
Target:  5'- gACAAucCCCCGUUGGugauugcgaaGUCGGCGGugGUa -3'
miRNA:   3'- -UGUU--GGGGUAGCUg---------CAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 18321 0.67 0.888591
Target:  5'- cACGAUCCUucaGGUGUCGuCGAACGCg -3'
miRNA:   3'- -UGUUGGGGuagCUGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 16603 0.69 0.830232
Target:  5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3'
miRNA:   3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 15138 0.66 0.933301
Target:  5'- gACGguGCCCCGuaccugaUCGGCGaCAACGggUuaggGCa -3'
miRNA:   3'- -UGU--UGGGGU-------AGCUGCaGUUGCuuG----CG- -5'
19623 5' -50.9 NC_004686.1 + 13922 0.68 0.868339
Target:  5'- cCAGuCCCCAUCccacaaucggaugagGACGUCuuCGucGCGCa -3'
miRNA:   3'- uGUU-GGGGUAG---------------CUGCAGuuGCu-UGCG- -5'
19623 5' -50.9 NC_004686.1 + 13514 0.66 0.939176
Target:  5'- cACAACCCCGUCaacacaucacgaGAC-UCAGCagcCGCa -3'
miRNA:   3'- -UGUUGGGGUAG------------CUGcAGUUGcuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 10757 0.69 0.800833
Target:  5'- gGC-ACCCCcgCGGCG-CAAgccgcccUGGACGCg -3'
miRNA:   3'- -UGuUGGGGuaGCUGCaGUU-------GCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 10220 0.73 0.607673
Target:  5'- aGCcGCCCCAaggCGGCGUCAAgguucUGAACcGCg -3'
miRNA:   3'- -UGuUGGGGUa--GCUGCAGUU-----GCUUG-CG- -5'
19623 5' -50.9 NC_004686.1 + 9958 0.73 0.596509
Target:  5'- uCGACCCCAUaucgucgagCGACGUUugAGCGAuCGCc -3'
miRNA:   3'- uGUUGGGGUA---------GCUGCAG--UUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 8944 0.66 0.934395
Target:  5'- uCGGCCCCcgaaucuccuggggUGACGUCcGCGAccugACGCc -3'
miRNA:   3'- uGUUGGGGua------------GCUGCAGuUGCU----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 8216 0.69 0.80181
Target:  5'- -gAACCCgGcCGGCGUCAACGAguACa- -3'
miRNA:   3'- ugUUGGGgUaGCUGCAGUUGCU--UGcg -5'
19623 5' -50.9 NC_004686.1 + 8140 0.68 0.865068
Target:  5'- --cACCCCGUCGACcacgCGgaccACGAACGa -3'
miRNA:   3'- uguUGGGGUAGCUGca--GU----UGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 8069 0.68 0.87317
Target:  5'- uGCGAUgCCCGUCGgugaaguccACGUCAACGu-UGCu -3'
miRNA:   3'- -UGUUG-GGGUAGC---------UGCAGUUGCuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.