Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 6671 | 0.7 | 0.740319 |
Target: 5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3' miRNA: 3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 6564 | 0.66 | 0.94422 |
Target: 5'- cGCAugCCCAgguUCGAUcaaaCGAgGGGCGCc -3' miRNA: 3'- -UGUugGGGU---AGCUGca--GUUgCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 5883 | 0.73 | 0.585377 |
Target: 5'- gAUcuCCCCuaucaggauucGUCGGCGUCGcggaccacaGCGAACGCa -3' miRNA: 3'- -UGuuGGGG-----------UAGCUGCAGU---------UGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 4271 | 0.71 | 0.696904 |
Target: 5'- --cGCCCaCGUcCGGCgGUCAACGGACGg -3' miRNA: 3'- uguUGGG-GUA-GCUG-CAGUUGCUUGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 3896 | 0.73 | 0.618859 |
Target: 5'- -aGGCCCCAagauccUCGAUGgguUCAACGAuCGCg -3' miRNA: 3'- ugUUGGGGU------AGCUGC---AGUUGCUuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 2910 | 0.66 | 0.942736 |
Target: 5'- -uGACCCCGUacaCGGCGguaguuguuaccggUCAGCGggUGa -3' miRNA: 3'- ugUUGGGGUA---GCUGC--------------AGUUGCuuGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 476 | 0.72 | 0.630056 |
Target: 5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3' miRNA: 3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 294 | 0.68 | 0.855867 |
Target: 5'- aGC-GCCUCAUCaguacugacgauGugGUCAaccucgaACGAACGCg -3' miRNA: 3'- -UGuUGGGGUAG------------CugCAGU-------UGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 172 | 0.68 | 0.856715 |
Target: 5'- aGCGuCCCCGUC-ACGcCGGCGAACc- -3' miRNA: 3'- -UGUuGGGGUAGcUGCaGUUGCUUGcg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 137 | 0.69 | 0.811483 |
Target: 5'- gACGAUCCCGgaUCGuCGUggaAGCGAACGg -3' miRNA: 3'- -UGUUGGGGU--AGCuGCAg--UUGCUUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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