Results 21 - 40 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 29112 | 0.77 | 0.380522 |
Target: 5'- aGCAGCgUCGggaUCGGCGUCGGCGGGcCGCg -3' miRNA: 3'- -UGUUGgGGU---AGCUGCAGUUGCUU-GCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 43742 | 0.74 | 0.530491 |
Target: 5'- cGCAACCugggccgccgcgCCAUCGGCGUCGAacucgaaGAACGg -3' miRNA: 3'- -UGUUGG------------GGUAGCUGCAGUUg------CUUGCg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 21798 | 0.74 | 0.541338 |
Target: 5'- cCAACCCCuGUCGGCGcgacgCAcuuGCGggUGCg -3' miRNA: 3'- uGUUGGGG-UAGCUGCa----GU---UGCuuGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 41657 | 0.73 | 0.607673 |
Target: 5'- aACAACUCCuggaCGACG-CAGCGAagaaggGCGCg -3' miRNA: 3'- -UGUUGGGGua--GCUGCaGUUGCU------UGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 52057 | 0.72 | 0.663618 |
Target: 5'- cGCAA-CCCAUCGcCGUgCAACGAuUGCa -3' miRNA: 3'- -UGUUgGGGUAGCuGCA-GUUGCUuGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 4271 | 0.71 | 0.696904 |
Target: 5'- --cGCCCaCGUcCGGCgGUCAACGGACGg -3' miRNA: 3'- uguUGGG-GUA-GCUG-CAGUUGCUUGCg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 24865 | 0.7 | 0.740319 |
Target: 5'- cACAggacACCCCGccaUCGACuucuUCAuCGAACGCg -3' miRNA: 3'- -UGU----UGGGGU---AGCUGc---AGUuGCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 41605 | 0.7 | 0.771735 |
Target: 5'- aACuACCCCAccgaaaUCGAaGUUGAgGAACGCg -3' miRNA: 3'- -UGuUGGGGU------AGCUgCAGUUgCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 52294 | 0.69 | 0.830232 |
Target: 5'- uCGGCCCCcUCGGCu---GCGAAUGCc -3' miRNA: 3'- uGUUGGGGuAGCUGcaguUGCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 16603 | 0.69 | 0.830232 |
Target: 5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3' miRNA: 3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 31289 | 0.69 | 0.809563 |
Target: 5'- cACGugCUCGaauUCGGCGUCuuuuucaggguCGAACGCu -3' miRNA: 3'- -UGUugGGGU---AGCUGCAGuu---------GCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 8216 | 0.69 | 0.80181 |
Target: 5'- -gAACCCgGcCGGCGUCAACGAguACa- -3' miRNA: 3'- ugUUGGGgUaGCUGCAGUUGCU--UGcg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 10757 | 0.69 | 0.800833 |
Target: 5'- gGC-ACCCCcgCGGCG-CAAgccgcccUGGACGCg -3' miRNA: 3'- -UGuUGGGGuaGCUGCaGUU-------GCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 27724 | 0.69 | 0.791954 |
Target: 5'- gGCAACCCaGUCGGCGaagggcUCGGCaucguGAugGCg -3' miRNA: 3'- -UGUUGGGgUAGCUGC------AGUUG-----CUugCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 55253 | 0.69 | 0.791954 |
Target: 5'- uCAACCUCAUCGGCcaauaCGACGAGgGUu -3' miRNA: 3'- uGUUGGGGUAGCUGca---GUUGCUUgCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 6564 | 0.66 | 0.94422 |
Target: 5'- cGCAugCCCAgguUCGAUcaaaCGAgGGGCGCc -3' miRNA: 3'- -UGUugGGGU---AGCUGca--GUUgCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 32539 | 0.74 | 0.519725 |
Target: 5'- aACAACaUCGUCGcCGUCAuCGGGCGCa -3' miRNA: 3'- -UGUUGgGGUAGCuGCAGUuGCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 54153 | 0.74 | 0.541338 |
Target: 5'- gGCAACgCCAacgCGAUGUCGcgGCGAACaGCg -3' miRNA: 3'- -UGUUGgGGUa--GCUGCAGU--UGCUUG-CG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 5883 | 0.73 | 0.585377 |
Target: 5'- gAUcuCCCCuaucaggauucGUCGGCGUCGcggaccacaGCGAACGCa -3' miRNA: 3'- -UGuuGGGG-----------UAGCUGCAGU---------UGCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 9958 | 0.73 | 0.596509 |
Target: 5'- uCGACCCCAUaucgucgagCGACGUUugAGCGAuCGCc -3' miRNA: 3'- uGUUGGGGUA---------GCUGCAG--UUGCUuGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home