miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 27498 0.68 0.860086
Target:  5'- -aGACCCCggCGgaaGUCGGCGAgccgguagugcagcgGCGCg -3'
miRNA:   3'- ugUUGGGGuaGCug-CAGUUGCU---------------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 8140 0.68 0.865068
Target:  5'- --cACCCCGUCGACcacgCGgaccACGAACGa -3'
miRNA:   3'- uguUGGGGUAGCUGca--GU----UGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 13922 0.68 0.868339
Target:  5'- cCAGuCCCCAUCccacaaucggaugagGACGUCuuCGucGCGCa -3'
miRNA:   3'- uGUU-GGGGUAG---------------CUGCAGuuGCu-UGCG- -5'
19623 5' -50.9 NC_004686.1 + 8069 0.68 0.87317
Target:  5'- uGCGAUgCCCGUCGgugaaguccACGUCAACGu-UGCu -3'
miRNA:   3'- -UGUUG-GGGUAGC---------UGCAGUUGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 19332 0.67 0.888591
Target:  5'- aGCAGCCCuCGcCGAacUCAGCGAGuCGUa -3'
miRNA:   3'- -UGUUGGG-GUaGCUgcAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 53334 0.67 0.895899
Target:  5'- uGCAACCCCAUC-AUGgguuuagugaUCcgcgacugcccgAACGGACGCu -3'
miRNA:   3'- -UGUUGGGGUAGcUGC----------AG------------UUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 53071 0.67 0.895899
Target:  5'- cCAA-CCCAUUGAUGUCAGaccaauGCGCa -3'
miRNA:   3'- uGUUgGGGUAGCUGCAGUUgcu---UGCG- -5'
19623 5' -50.9 NC_004686.1 + 51721 0.7 0.781925
Target:  5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3'
miRNA:   3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 50928 0.7 0.780913
Target:  5'- gACAACaCCCAcacggauUCGACGUCGuCG-GCGUu -3'
miRNA:   3'- -UGUUG-GGGU-------AGCUGCAGUuGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 32539 0.74 0.519725
Target:  5'- aACAACaUCGUCGcCGUCAuCGGGCGCa -3'
miRNA:   3'- -UGUUGgGGUAGCuGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 54153 0.74 0.541338
Target:  5'- gGCAACgCCAacgCGAUGUCGcgGCGAACaGCg -3'
miRNA:   3'- -UGUUGgGGUa--GCUGCAGU--UGCUUG-CG- -5'
19623 5' -50.9 NC_004686.1 + 5883 0.73 0.585377
Target:  5'- gAUcuCCCCuaucaggauucGUCGGCGUCGcggaccacaGCGAACGCa -3'
miRNA:   3'- -UGuuGGGG-----------UAGCUGCAGU---------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 9958 0.73 0.596509
Target:  5'- uCGACCCCAUaucgucgagCGACGUUugAGCGAuCGCc -3'
miRNA:   3'- uGUUGGGGUA---------GCUGCAG--UUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 10220 0.73 0.607673
Target:  5'- aGCcGCCCCAaggCGGCGUCAAgguucUGAACcGCg -3'
miRNA:   3'- -UGuUGGGGUa--GCUGCAGUU-----GCUUG-CG- -5'
19623 5' -50.9 NC_004686.1 + 3896 0.73 0.618859
Target:  5'- -aGGCCCCAagauccUCGAUGgguUCAACGAuCGCg -3'
miRNA:   3'- ugUUGGGGU------AGCUGC---AGUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 476 0.72 0.630056
Target:  5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3'
miRNA:   3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19629 0.72 0.674758
Target:  5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3'
miRNA:   3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 6671 0.7 0.740319
Target:  5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3'
miRNA:   3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 25933 0.7 0.761396
Target:  5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3'
miRNA:   3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5'
19623 5' -50.9 NC_004686.1 + 53956 0.7 0.771735
Target:  5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3'
miRNA:   3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.