Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19623 | 5' | -50.9 | NC_004686.1 | + | 476 | 0.72 | 0.630056 |
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Target: 5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3' miRNA: 3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 19629 | 0.72 | 0.674758 |
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Target: 5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3' miRNA: 3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 6671 | 0.7 | 0.740319 |
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Target: 5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3' miRNA: 3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 25933 | 0.7 | 0.761396 |
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Target: 5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3' miRNA: 3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 53956 | 0.7 | 0.771735 |
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Target: 5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3' miRNA: 3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 50928 | 0.7 | 0.780913 |
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Target: 5'- gACAACaCCCAcacggauUCGACGUCGuCG-GCGUu -3' miRNA: 3'- -UGUUG-GGGU-------AGCUGCAGUuGCuUGCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 51721 | 0.7 | 0.781925 |
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Target: 5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3' miRNA: 3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 137 | 0.69 | 0.811483 |
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Target: 5'- gACGAUCCCGgaUCGuCGUggaAGCGAACGg -3' miRNA: 3'- -UGUUGGGGU--AGCuGCAg--UUGCUUGCg -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 21246 | 0.68 | 0.839288 |
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Target: 5'- cCAGCCCCcgCGGCG-CGGaacAACGCc -3' miRNA: 3'- uGUUGGGGuaGCUGCaGUUgc-UUGCG- -5' |
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| 19623 | 5' | -50.9 | NC_004686.1 | + | 41770 | 1.13 | 0.00182 |
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Target: 5'- cACAACCCCAUCGACGUCAACGAACGCg -3' miRNA: 3'- -UGUUGGGGUAGCUGCAGUUGCUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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