miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 41770 1.13 0.00182
Target:  5'- cACAACCCCAUCGACGUCAACGAACGCg -3'
miRNA:   3'- -UGUUGGGGUAGCUGCAGUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19222 0.68 0.856715
Target:  5'- cACGuCCUCAUCGGCGUCGA--AAUGUu -3'
miRNA:   3'- -UGUuGGGGUAGCUGCAGUUgcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 27498 0.68 0.860086
Target:  5'- -aGACCCCggCGgaaGUCGGCGAgccgguagugcagcgGCGCg -3'
miRNA:   3'- ugUUGGGGuaGCug-CAGUUGCU---------------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 6564 0.66 0.94422
Target:  5'- cGCAugCCCAgguUCGAUcaaaCGAgGGGCGCc -3'
miRNA:   3'- -UGUugGGGU---AGCUGca--GUUgCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 9958 0.73 0.596509
Target:  5'- uCGACCCCAUaucgucgagCGACGUUugAGCGAuCGCc -3'
miRNA:   3'- uGUUGGGGUA---------GCUGCAG--UUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 10220 0.73 0.607673
Target:  5'- aGCcGCCCCAaggCGGCGUCAAgguucUGAACcGCg -3'
miRNA:   3'- -UGuUGGGGUa--GCUGCAGUU-----GCUUG-CG- -5'
19623 5' -50.9 NC_004686.1 + 476 0.72 0.630056
Target:  5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3'
miRNA:   3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19629 0.72 0.674758
Target:  5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3'
miRNA:   3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 53956 0.7 0.771735
Target:  5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3'
miRNA:   3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 294 0.68 0.855867
Target:  5'- aGC-GCCUCAUCaguacugacgauGugGUCAaccucgaACGAACGCg -3'
miRNA:   3'- -UGuUGGGGUAG------------CugCAGU-------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 51721 0.7 0.781925
Target:  5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3'
miRNA:   3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 25933 0.7 0.761396
Target:  5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3'
miRNA:   3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5'
19623 5' -50.9 NC_004686.1 + 32539 0.74 0.519725
Target:  5'- aACAACaUCGUCGcCGUCAuCGGGCGCa -3'
miRNA:   3'- -UGUUGgGGUAGCuGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 137 0.69 0.811483
Target:  5'- gACGAUCCCGgaUCGuCGUggaAGCGAACGg -3'
miRNA:   3'- -UGUUGGGGU--AGCuGCAg--UUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 54153 0.74 0.541338
Target:  5'- gGCAACgCCAacgCGAUGUCGcgGCGAACaGCg -3'
miRNA:   3'- -UGUUGgGGUa--GCUGCAGU--UGCUUG-CG- -5'
19623 5' -50.9 NC_004686.1 + 6671 0.7 0.740319
Target:  5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3'
miRNA:   3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 21246 0.68 0.839288
Target:  5'- cCAGCCCCcgCGGCG-CGGaacAACGCc -3'
miRNA:   3'- uGUUGGGGuaGCUGCaGUUgc-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 172 0.68 0.856715
Target:  5'- aGCGuCCCCGUC-ACGcCGGCGAACc- -3'
miRNA:   3'- -UGUuGGGGUAGcUGCaGUUGCUUGcg -5'
19623 5' -50.9 NC_004686.1 + 5883 0.73 0.585377
Target:  5'- gAUcuCCCCuaucaggauucGUCGGCGUCGcggaccacaGCGAACGCa -3'
miRNA:   3'- -UGuuGGGG-----------UAGCUGCAGU---------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 3896 0.73 0.618859
Target:  5'- -aGGCCCCAagauccUCGAUGgguUCAACGAuCGCg -3'
miRNA:   3'- ugUUGGGGU------AGCUGC---AGUUGCUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.