miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 294 0.68 0.855867
Target:  5'- aGC-GCCUCAUCaguacugacgauGugGUCAaccucgaACGAACGCg -3'
miRNA:   3'- -UGuUGGGGUAG------------CugCAGU-------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 6671 0.7 0.740319
Target:  5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3'
miRNA:   3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 6564 0.66 0.94422
Target:  5'- cGCAugCCCAgguUCGAUcaaaCGAgGGGCGCc -3'
miRNA:   3'- -UGUugGGGU---AGCUGca--GUUgCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 53209 0.66 0.916153
Target:  5'- cCGACUUUAUCGuucCGUCAGCGuuuuucAGCGCc -3'
miRNA:   3'- uGUUGGGGUAGCu--GCAGUUGC------UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 27498 0.68 0.860086
Target:  5'- -aGACCCCggCGgaaGUCGGCGAgccgguagugcagcgGCGCg -3'
miRNA:   3'- ugUUGGGGuaGCug-CAGUUGCU---------------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 19629 0.72 0.674758
Target:  5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3'
miRNA:   3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 41825 0.66 0.916153
Target:  5'- -gGAgUUCAUCG-CGUCGAUGAACGa -3'
miRNA:   3'- ugUUgGGGUAGCuGCAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 476 0.72 0.630056
Target:  5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3'
miRNA:   3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 3896 0.73 0.618859
Target:  5'- -aGGCCCCAagauccUCGAUGgguUCAACGAuCGCg -3'
miRNA:   3'- ugUUGGGGU------AGCUGC---AGUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 8140 0.68 0.865068
Target:  5'- --cACCCCGUCGACcacgCGgaccACGAACGa -3'
miRNA:   3'- uguUGGGGUAGCUGca--GU----UGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 36945 0.66 0.93385
Target:  5'- cGCAACucgugcacaCCgGUCGACGUUu-CGAACGa -3'
miRNA:   3'- -UGUUG---------GGgUAGCUGCAGuuGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 51721 0.7 0.781925
Target:  5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3'
miRNA:   3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 25933 0.7 0.761396
Target:  5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3'
miRNA:   3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5'
19623 5' -50.9 NC_004686.1 + 19332 0.67 0.888591
Target:  5'- aGCAGCCCuCGcCGAacUCAGCGAGuCGUa -3'
miRNA:   3'- -UGUUGGG-GUaGCUgcAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 43744 0.66 0.916153
Target:  5'- gGCGguGCCCCAUugcccugaugUGGCaUCGGCGGAgGCu -3'
miRNA:   3'- -UGU--UGGGGUA----------GCUGcAGUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 16603 0.69 0.830232
Target:  5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3'
miRNA:   3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 31289 0.69 0.809563
Target:  5'- cACGugCUCGaauUCGGCGUCuuuuucaggguCGAACGCu -3'
miRNA:   3'- -UGUugGGGU---AGCUGCAGuu---------GCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49312 0.66 0.922338
Target:  5'- -gGACCgaCGUgCGACGa-AGCGAACGCg -3'
miRNA:   3'- ugUUGGg-GUA-GCUGCagUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 22373 0.66 0.916153
Target:  5'- gACGGCUCCAaUGGCGgcaccggCAcCGAugGCu -3'
miRNA:   3'- -UGUUGGGGUaGCUGCa------GUuGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 39738 0.66 0.922338
Target:  5'- gGCGGCCCgCcugcUCGACGaCGgcgccuccuacACGGACGCc -3'
miRNA:   3'- -UGUUGGG-Gu---AGCUGCaGU-----------UGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.