miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 21727 0.66 0.928237
Target:  5'- -gAACCCCGUCGGuCG-CcgUGAAgGCu -3'
miRNA:   3'- ugUUGGGGUAGCU-GCaGuuGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 4271 0.71 0.696904
Target:  5'- --cGCCCaCGUcCGGCgGUCAACGGACGg -3'
miRNA:   3'- uguUGGG-GUA-GCUG-CAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 52057 0.72 0.663618
Target:  5'- cGCAA-CCCAUCGcCGUgCAACGAuUGCa -3'
miRNA:   3'- -UGUUgGGGUAGCuGCA-GUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 41657 0.73 0.607673
Target:  5'- aACAACUCCuggaCGACG-CAGCGAagaaggGCGCg -3'
miRNA:   3'- -UGUUGGGGua--GCUGCaGUUGCU------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 22373 0.66 0.916153
Target:  5'- gACGGCUCCAaUGGCGgcaccggCAcCGAugGCu -3'
miRNA:   3'- -UGUUGGGGUaGCUGCa------GUuGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 43742 0.74 0.530491
Target:  5'- cGCAACCugggccgccgcgCCAUCGGCGUCGAacucgaaGAACGg -3'
miRNA:   3'- -UGUUGG------------GGUAGCUGCAGUUg------CUUGCg -5'
19623 5' -50.9 NC_004686.1 + 49312 0.66 0.922338
Target:  5'- -gGACCgaCGUgCGACGa-AGCGAACGCg -3'
miRNA:   3'- ugUUGGg-GUA-GCUGCagUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 10757 0.69 0.800833
Target:  5'- gGC-ACCCCcgCGGCG-CAAgccgcccUGGACGCg -3'
miRNA:   3'- -UGuUGGGGuaGCUGCaGUU-------GCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 8216 0.69 0.80181
Target:  5'- -gAACCCgGcCGGCGUCAACGAguACa- -3'
miRNA:   3'- ugUUGGGgUaGCUGCAGUUGCU--UGcg -5'
19623 5' -50.9 NC_004686.1 + 30430 0.67 0.888591
Target:  5'- -gAACCCgGUCGAUGgUCGccACGAugcgauccaACGCa -3'
miRNA:   3'- ugUUGGGgUAGCUGC-AGU--UGCU---------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 22478 0.67 0.895898
Target:  5'- uCAGCCCCGcccCGGCGgCGAUGAcCGUc -3'
miRNA:   3'- uGUUGGGGUa--GCUGCaGUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 18321 0.67 0.888591
Target:  5'- cACGAUCCUucaGGUGUCGuCGAACGCg -3'
miRNA:   3'- -UGUUGGGGuagCUGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 55980 0.67 0.881013
Target:  5'- cCAACCCCucacugGUCGACcaCAGCGAcaACGg -3'
miRNA:   3'- uGUUGGGG------UAGCUGcaGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 22325 0.68 0.868339
Target:  5'- gACGGCCCCGccgguaauggcggguUCGGa-UCGGCGGGCGg -3'
miRNA:   3'- -UGUUGGGGU---------------AGCUgcAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 23801 0.68 0.865068
Target:  5'- cGCAACCCCcgcCGAUGUgAGC-GugGCu -3'
miRNA:   3'- -UGUUGGGGua-GCUGCAgUUGcUugCG- -5'
19623 5' -50.9 NC_004686.1 + 32324 0.68 0.856715
Target:  5'- aGCAGCCCCucagccaCGGCGUCcuUcAACGCc -3'
miRNA:   3'- -UGUUGGGGua-----GCUGCAGuuGcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 18862 0.67 0.895898
Target:  5'- gACAAucCCCCGUUGGugauugcgaaGUCGGCGGugGUa -3'
miRNA:   3'- -UGUU--GGGGUAGCUg---------CAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 40311 0.67 0.90293
Target:  5'- gGC-ACUUCAUCGGCGUCAGUGAccACuGCu -3'
miRNA:   3'- -UGuUGGGGUAGCUGCAGUUGCU--UG-CG- -5'
19623 5' -50.9 NC_004686.1 + 16603 0.69 0.830232
Target:  5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3'
miRNA:   3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 31289 0.69 0.809563
Target:  5'- cACGugCUCGaauUCGGCGUCuuuuucaggguCGAACGCu -3'
miRNA:   3'- -UGUugGGGU---AGCUGCAGuu---------GCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.