Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19625 | 3' | -57.5 | NC_004686.1 | + | 21824 | 0.73 | 0.235089 |
Target: 5'- -gCGGGUgcgccUCGGCGgCGcgGGCGCGGg -3' miRNA: 3'- aaGCUCA-----AGCUGCgGCuaCCGCGCCg -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 23213 | 0.66 | 0.62394 |
Target: 5'- gUCGuca--GGCGCgGGaGGUGCGGCa -3' miRNA: 3'- aAGCucaagCUGCGgCUaCCGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 21165 | 0.67 | 0.559454 |
Target: 5'- -gCGuuGUUCcGCGCCGcgGGgGCuGGCa -3' miRNA: 3'- aaGCu-CAAGcUGCGGCuaCCgCG-CCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 19131 | 0.67 | 0.548859 |
Target: 5'- aUCGAGggugaacauUUCGACGCCGAUgaGGaCGUGa- -3' miRNA: 3'- aAGCUC---------AAGCUGCGGCUA--CC-GCGCcg -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 29118 | 0.67 | 0.517478 |
Target: 5'- gUCGGGaUCGGCGUCGGcgGGcCGCGcuuGCg -3' miRNA: 3'- aAGCUCaAGCUGCGGCUa-CC-GCGC---CG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 14507 | 0.67 | 0.517478 |
Target: 5'- -gCGAuc-CGGaGCCG-UGGCGCGGCg -3' miRNA: 3'- aaGCUcaaGCUgCGGCuACCGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 40119 | 0.68 | 0.49696 |
Target: 5'- -cCGAGcgUGaACGCCGAccacUGGUGCaGGCu -3' miRNA: 3'- aaGCUCaaGC-UGCGGCU----ACCGCG-CCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 40722 | 0.68 | 0.486839 |
Target: 5'- -gCGAGggaCGACGCgaaaGccGGUGCGGCu -3' miRNA: 3'- aaGCUCaa-GCUGCGg---CuaCCGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 10120 | 0.68 | 0.465911 |
Target: 5'- gUUCGAuggcgcgGUUCagaaccuuGACGCCGccuUGGgGCGGCu -3' miRNA: 3'- -AAGCU-------CAAG--------CUGCGGCu--ACCgCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 21070 | 0.69 | 0.4378 |
Target: 5'- gUUCGAGUgggucucaGACuGCCaccuacGGUGGUGUGGCg -3' miRNA: 3'- -AAGCUCAag------CUG-CGG------CUACCGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 27337 | 0.73 | 0.247413 |
Target: 5'- aUCGGGUUCucccagGGCG-CGAUGGUGUGGUg -3' miRNA: 3'- aAGCUCAAG------CUGCgGCUACCGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 20971 | 0.7 | 0.348912 |
Target: 5'- -aCGGGgguauaUCGGCGCCGAUcacugguauugGGgGCGGUa -3' miRNA: 3'- aaGCUCa-----AGCUGCGGCUA-----------CCgCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 43716 | 0.7 | 0.365627 |
Target: 5'- gUUCcGGUUCGACGuuGGU--CGCGGCa -3' miRNA: 3'- -AAGcUCAAGCUGCggCUAccGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 12138 | 0.7 | 0.386403 |
Target: 5'- -gCGGGcaguUUCGGCGCCGgcGGUcaggccgcggggccaGCGGCg -3' miRNA: 3'- aaGCUC----AAGCUGCGGCuaCCG---------------CGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 15452 | 0.69 | 0.400679 |
Target: 5'- uUUCu-GUg-GAUGCUGGUGGCGUGGCc -3' miRNA: 3'- -AAGcuCAagCUGCGGCUACCGCGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 21880 | 0.69 | 0.400679 |
Target: 5'- -cCGGGUaucgcuacggCGGCGgCGGUGGCGgUGGCg -3' miRNA: 3'- aaGCUCAa---------GCUGCgGCUACCGC-GCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 33717 | 0.66 | 0.613125 |
Target: 5'- -aCG-GUcaUCGcCGCCGG-GGCGgGGCu -3' miRNA: 3'- aaGCuCA--AGCuGCGGCUaCCGCgCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 47025 | 0.81 | 0.066897 |
Target: 5'- gUCGAGUUCGGCGaCCGAUcucacGGCcgGCGGCu -3' miRNA: 3'- aAGCUCAAGCUGC-GGCUA-----CCG--CGCCG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 11757 | 0.77 | 0.143625 |
Target: 5'- cUUCGAGUUCGACGCCGAUuGCuuugcgacccaaguuGCGuGCc -3' miRNA: 3'- -AAGCUCAAGCUGCGGCUAcCG---------------CGC-CG- -5' |
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19625 | 3' | -57.5 | NC_004686.1 | + | 31318 | 0.73 | 0.235089 |
Target: 5'- gUCGcGUUCGAUgaagaaGUCGAUGGCGgGGUg -3' miRNA: 3'- aAGCuCAAGCUG------CGGCUACCGCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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