miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19626 3' -57.6 NC_004686.1 + 3455 0.66 0.621993
Target:  5'- gGUGCCGUggcuugcggaGACCGAgGUcGGUuuGGAa -3'
miRNA:   3'- gCACGGCG----------CUGGUUgCAcCUAggCCU- -5'
19626 3' -57.6 NC_004686.1 + 25162 0.67 0.589971
Target:  5'- uGUgGUCGCGGCCAAggcugcugGUGGuucuGUCCGGGa -3'
miRNA:   3'- gCA-CGGCGCUGGUUg-------CACC----UAGGCCU- -5'
19626 3' -57.6 NC_004686.1 + 26511 0.67 0.568777
Target:  5'- gGUGCUGCGcaaGgCAA-GUgGGAUCCGGGg -3'
miRNA:   3'- gCACGGCGC---UgGUUgCA-CCUAGGCCU- -5'
19626 3' -57.6 NC_004686.1 + 52658 0.67 0.558249
Target:  5'- gCGUGCCGCGGCCcugAACGcGGcguuugUCGGc -3'
miRNA:   3'- -GCACGGCGCUGG---UUGCaCCua----GGCCu -5'
19626 3' -57.6 NC_004686.1 + 16015 0.67 0.550912
Target:  5'- aCGUGCaagaacccggguaucCGCGugUGGCGUGGuuugaagGUCCGGu -3'
miRNA:   3'- -GCACG---------------GCGCugGUUGCACC-------UAGGCCu -5'
19626 3' -57.6 NC_004686.1 + 32703 0.67 0.547777
Target:  5'- gGUGCCGuCGAgCAGCauuuugcgGGcUCCGGAc -3'
miRNA:   3'- gCACGGC-GCUgGUUGca------CCuAGGCCU- -5'
19626 3' -57.6 NC_004686.1 + 17874 0.69 0.45706
Target:  5'- --cGCCgaguGCGGCgGAUGUGGAguggCCGGGu -3'
miRNA:   3'- gcaCGG----CGCUGgUUGCACCUa---GGCCU- -5'
19626 3' -57.6 NC_004686.1 + 47618 0.69 0.428623
Target:  5'- uCGUGCC-UGACCGguACGgGGAUCCGa- -3'
miRNA:   3'- -GCACGGcGCUGGU--UGCaCCUAGGCcu -5'
19626 3' -57.6 NC_004686.1 + 42963 0.7 0.383642
Target:  5'- --cGCCGCGAagacaCCAACGUGGcGUCCaacGGGc -3'
miRNA:   3'- gcaCGGCGCU-----GGUUGCACC-UAGG---CCU- -5'
19626 3' -57.6 NC_004686.1 + 1637 0.71 0.366548
Target:  5'- --gGCgGCGGaugUUGAUGUGGAUCCGGAa -3'
miRNA:   3'- gcaCGgCGCU---GGUUGCACCUAGGCCU- -5'
19626 3' -57.6 NC_004686.1 + 31905 0.72 0.303551
Target:  5'- -aUGCCGUGGCCGGuucCGUGGuugucgcacAUCCGGGu -3'
miRNA:   3'- gcACGGCGCUGGUU---GCACC---------UAGGCCU- -5'
19626 3' -57.6 NC_004686.1 + 12478 0.9 0.01843
Target:  5'- gCGUGCCGCGACCAACGUcGAaCCGGAa -3'
miRNA:   3'- -GCACGGCGCUGGUUGCAcCUaGGCCU- -5'
19626 3' -57.6 NC_004686.1 + 11794 1.09 0.000736
Target:  5'- gCGUGCCGCGACCAACGUGGAUCCGGAa -3'
miRNA:   3'- -GCACGGCGCUGGUUGCACCUAGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.