miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19629 3' -61.7 NC_004686.1 + 34226 0.66 0.402631
Target:  5'- cGCCAGCGCCGCCgaguccgCGcGUCGUUgaguacgUCGg -3'
miRNA:   3'- aUGGUCGUGGCGG-------GCcCGGCAGa------AGC- -5'
19629 3' -61.7 NC_004686.1 + 49969 0.66 0.394716
Target:  5'- gACCGGCGCCGUaCGGGgaGUCa--- -3'
miRNA:   3'- aUGGUCGUGGCGgGCCCggCAGaagc -5'
19629 3' -61.7 NC_004686.1 + 52783 0.66 0.38604
Target:  5'- aUACCcGCAUCaGCCUGcGCCGaCUUCGa -3'
miRNA:   3'- -AUGGuCGUGG-CGGGCcCGGCaGAAGC- -5'
19629 3' -61.7 NC_004686.1 + 34335 0.66 0.360779
Target:  5'- aUACCcggaguucgAGCGCCGUCCGGaGCCGcCg--- -3'
miRNA:   3'- -AUGG---------UCGUGGCGGGCC-CGGCaGaagc -5'
19629 3' -61.7 NC_004686.1 + 29574 0.66 0.360779
Target:  5'- aGgCAGCGuCgGCCCGGGCUGcggUUCGa -3'
miRNA:   3'- aUgGUCGU-GgCGGGCCCGGCag-AAGC- -5'
19629 3' -61.7 NC_004686.1 + 41873 0.67 0.352619
Target:  5'- aACCGGCGCUGUCCcauGGCCGcUCaUCc -3'
miRNA:   3'- aUGGUCGUGGCGGGc--CCGGC-AGaAGc -5'
19629 3' -61.7 NC_004686.1 + 47568 0.67 0.352619
Target:  5'- cGCCGGC-UgGCCCGcGCUGUCggUCGg -3'
miRNA:   3'- aUGGUCGuGgCGGGCcCGGCAGa-AGC- -5'
19629 3' -61.7 NC_004686.1 + 55346 0.67 0.343794
Target:  5'- cGCCAGCguGCCGUCCucacgcaaacccaGGGCCGcguaccaaaugUCUUCc -3'
miRNA:   3'- aUGGUCG--UGGCGGG-------------CCCGGC-----------AGAAGc -5'
19629 3' -61.7 NC_004686.1 + 50514 0.67 0.336693
Target:  5'- -cCCAG-ACCGUCCGGGUCGcCgaacUCGa -3'
miRNA:   3'- auGGUCgUGGCGGGCCCGGCaGa---AGC- -5'
19629 3' -61.7 NC_004686.1 + 33876 0.67 0.328929
Target:  5'- cGCCAuUACCGgCgGGGCCGUCg--- -3'
miRNA:   3'- aUGGUcGUGGCgGgCCCGGCAGaagc -5'
19629 3' -61.7 NC_004686.1 + 43585 0.67 0.328929
Target:  5'- cACCAGCGCCGCaaugaUGGGCgGaUCaaCGg -3'
miRNA:   3'- aUGGUCGUGGCGg----GCCCGgC-AGaaGC- -5'
19629 3' -61.7 NC_004686.1 + 55794 0.68 0.306436
Target:  5'- cGCCGGUugACCGCCCGGcGUCGg---CGu -3'
miRNA:   3'- aUGGUCG--UGGCGGGCC-CGGCagaaGC- -5'
19629 3' -61.7 NC_004686.1 + 33824 0.72 0.150889
Target:  5'- gUGCCGGUGCCGCCauuGGaGCCGUCa--- -3'
miRNA:   3'- -AUGGUCGUGGCGGg--CC-CGGCAGaagc -5'
19629 3' -61.7 NC_004686.1 + 19515 0.74 0.112379
Target:  5'- aGCCGGCACCGCagaCGGGCguucUCUUCa -3'
miRNA:   3'- aUGGUCGUGGCGg--GCCCGgc--AGAAGc -5'
19629 3' -61.7 NC_004686.1 + 10112 1.06 0.000401
Target:  5'- uUACCAGCACCGCCCGGGCCGUCUUCGu -3'
miRNA:   3'- -AUGGUCGUGGCGGGCCCGGCAGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.