miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19631 3' -53.2 NC_004686.1 + 50861 0.66 0.83241
Target:  5'- aGCCaGGUCGGGCGuggcugaggugccggUGGUCAGcUGACg -3'
miRNA:   3'- aUGG-CCAGUCCGU---------------GCUAGUUaGCUGa -5'
19631 3' -53.2 NC_004686.1 + 11488 0.66 0.829664
Target:  5'- -cCCGGguuugagaaugguGGCGCGAUCcccgcGAUCGACUa -3'
miRNA:   3'- auGGCCagu----------CCGUGCUAG-----UUAGCUGA- -5'
19631 3' -53.2 NC_004686.1 + 10463 0.66 0.819431
Target:  5'- gGCCGGccUUGGGUGCGGgagCAuUCGGCg -3'
miRNA:   3'- aUGGCC--AGUCCGUGCUa--GUuAGCUGa -5'
19631 3' -53.2 NC_004686.1 + 36748 0.66 0.809914
Target:  5'- cGCCGaUC-GGCACGGUCGuggUGACg -3'
miRNA:   3'- aUGGCcAGuCCGUGCUAGUua-GCUGa -5'
19631 3' -53.2 NC_004686.1 + 27626 0.66 0.790311
Target:  5'- cUGCCGGUCGGGaucagACGG-CGAUCGcCc -3'
miRNA:   3'- -AUGGCCAGUCCg----UGCUaGUUAGCuGa -5'
19631 3' -53.2 NC_004686.1 + 52870 0.67 0.768994
Target:  5'- gGCCGGUCggaaugaaacgucGGGCGCcagGAUCAugCGGCg -3'
miRNA:   3'- aUGGCCAG-------------UCCGUG---CUAGUuaGCUGa -5'
19631 3' -53.2 NC_004686.1 + 30278 0.67 0.749149
Target:  5'- cUGCCGGUCGGGCAU--UCcGUUGGg- -3'
miRNA:   3'- -AUGGCCAGUCCGUGcuAGuUAGCUga -5'
19631 3' -53.2 NC_004686.1 + 55503 0.68 0.695014
Target:  5'- cGCCGGaUgAGGUACG--CGAUCGGCa -3'
miRNA:   3'- aUGGCC-AgUCCGUGCuaGUUAGCUGa -5'
19631 3' -53.2 NC_004686.1 + 53380 0.68 0.68395
Target:  5'- cACCGGaUCcGGCACcgGAaCGGUCGACa -3'
miRNA:   3'- aUGGCC-AGuCCGUG--CUaGUUAGCUGa -5'
19631 3' -53.2 NC_004686.1 + 41059 0.68 0.672834
Target:  5'- cGCCGaUCAGGUACGGggCAccGUCGAUa -3'
miRNA:   3'- aUGGCcAGUCCGUGCUa-GU--UAGCUGa -5'
19631 3' -53.2 NC_004686.1 + 253 0.7 0.5723
Target:  5'- gUAUCGGUCcaugugcugauGGCGCGGUCGAUgGAUg -3'
miRNA:   3'- -AUGGCCAGu----------CCGUGCUAGUUAgCUGa -5'
19631 3' -53.2 NC_004686.1 + 52010 0.7 0.561259
Target:  5'- uUGCCGcacgCGGGCACGAUCuucCGGCg -3'
miRNA:   3'- -AUGGCca--GUCCGUGCUAGuuaGCUGa -5'
19631 3' -53.2 NC_004686.1 + 55422 0.75 0.327351
Target:  5'- aUACCGGgcagcUCAGGCGCGAUCAGuUCGu-- -3'
miRNA:   3'- -AUGGCC-----AGUCCGUGCUAGUU-AGCuga -5'
19631 3' -53.2 NC_004686.1 + 8588 1.06 0.002677
Target:  5'- gUACCGGUCAGGCACGAUCAAUCGACUu -3'
miRNA:   3'- -AUGGCCAGUCCGUGCUAGUUAGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.