miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19631 5' -62.3 NC_004686.1 + 21831 0.66 0.412057
Target:  5'- -cGCCU---CGGCGGCGCGGGCgcgggCGGCg -3'
miRNA:   3'- gcUGGGcugGCUGUCGCGCCCG-----GUCG- -5'
19631 5' -62.3 NC_004686.1 + 27494 0.66 0.406785
Target:  5'- uCGACCCGcCCGA---UGCGGGUacgaguggcaucaugCAGCa -3'
miRNA:   3'- -GCUGGGCuGGCUgucGCGCCCG---------------GUCG- -5'
19631 5' -62.3 NC_004686.1 + 22326 0.66 0.403294
Target:  5'- aCGGCCCcGCCGGuaaUGGCggguucggaucgGCGGGCggCAGCg -3'
miRNA:   3'- -GCUGGGcUGGCU---GUCG------------CGCCCG--GUCG- -5'
19631 5' -62.3 NC_004686.1 + 272 0.66 0.403294
Target:  5'- uGGCgCGGUCGAUggauGUGCGGGgCGGCa -3'
miRNA:   3'- gCUGgGCUGGCUGu---CGCGCCCgGUCG- -5'
19631 5' -62.3 NC_004686.1 + 33441 0.66 0.403294
Target:  5'- uGACCaccgguGACCgcGAUAGcCGCGGcGCCGGg -3'
miRNA:   3'- gCUGGg-----CUGG--CUGUC-GCGCC-CGGUCg -5'
19631 5' -62.3 NC_004686.1 + 53781 0.66 0.394649
Target:  5'- aCGaACCCuuCCagguuGCAGCgGCGGGCCAaaGCa -3'
miRNA:   3'- -GC-UGGGcuGGc----UGUCG-CGCCCGGU--CG- -5'
19631 5' -62.3 NC_004686.1 + 6230 0.66 0.394649
Target:  5'- uGACUCc-CCGuACGGCGCcGGUCGGCc -3'
miRNA:   3'- gCUGGGcuGGC-UGUCGCGcCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 23938 0.66 0.386124
Target:  5'- uGACgCGGCCGACaaGGCauCGGGCuCGGg -3'
miRNA:   3'- gCUGgGCUGGCUG--UCGc-GCCCG-GUCg -5'
19631 5' -62.3 NC_004686.1 + 39840 0.66 0.386124
Target:  5'- gGACC--GCCGGCAGUGCGcugaauGGCgAGUg -3'
miRNA:   3'- gCUGGgcUGGCUGUCGCGC------CCGgUCG- -5'
19631 5' -62.3 NC_004686.1 + 33856 0.66 0.386124
Target:  5'- gGGCCgGGgUGAC-GCGaaGGCCGGCc -3'
miRNA:   3'- gCUGGgCUgGCUGuCGCgcCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 7964 0.66 0.386124
Target:  5'- uGACCCGACCgGGCAGCgGCuccCCGGa -3'
miRNA:   3'- gCUGGGCUGG-CUGUCG-CGcccGGUCg -5'
19631 5' -62.3 NC_004686.1 + 13259 0.66 0.386124
Target:  5'- aGAgCCG-CCGAgAGCcCGGGgCCuGCg -3'
miRNA:   3'- gCUgGGCuGGCUgUCGcGCCC-GGuCG- -5'
19631 5' -62.3 NC_004686.1 + 40505 0.66 0.377723
Target:  5'- uCGGCCUG-CUGcuGCGGCGUcagccGGGCCAccGCa -3'
miRNA:   3'- -GCUGGGCuGGC--UGUCGCG-----CCCGGU--CG- -5'
19631 5' -62.3 NC_004686.1 + 24126 0.66 0.377723
Target:  5'- aGACaCCGcCCGGCGGgGCGaaGGCCuGa -3'
miRNA:   3'- gCUG-GGCuGGCUGUCgCGC--CCGGuCg -5'
19631 5' -62.3 NC_004686.1 + 51262 0.66 0.377723
Target:  5'- gCGGCCCGgaaugucACUG-CGGCGCGGGaugggaccgcuggaaCAGUa -3'
miRNA:   3'- -GCUGGGC-------UGGCuGUCGCGCCCg--------------GUCG- -5'
19631 5' -62.3 NC_004686.1 + 17229 0.67 0.361292
Target:  5'- -aACCUGGCCGGCuucacCGGuGCCAGCu -3'
miRNA:   3'- gcUGGGCUGGCUGucgc-GCC-CGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 19056 0.67 0.361292
Target:  5'- gGugCUGGCCGGCAG-GCGucuuuGGCgCAGUu -3'
miRNA:   3'- gCugGGCUGGCUGUCgCGC-----CCG-GUCG- -5'
19631 5' -62.3 NC_004686.1 + 11285 0.67 0.34851
Target:  5'- cCGACCCGaACCGAggaaacaaccccaacCAGaa-GGGCCuGCc -3'
miRNA:   3'- -GCUGGGC-UGGCU---------------GUCgcgCCCGGuCG- -5'
19631 5' -62.3 NC_004686.1 + 22225 0.67 0.337593
Target:  5'- uGGCCagagcaGaACCaACGGCGCGGGCgCuGGCg -3'
miRNA:   3'- gCUGGg-----C-UGGcUGUCGCGCCCG-G-UCG- -5'
19631 5' -62.3 NC_004686.1 + 29710 0.67 0.337593
Target:  5'- cCGGCCCacuccuuguGGCCGAUGaCGCGGGUggcaGGCa -3'
miRNA:   3'- -GCUGGG---------CUGGCUGUcGCGCCCGg---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.