miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19631 5' -62.3 NC_004686.1 + 8623 1.1 0.000231
Target:  5'- gCGACCCGACCGACAGCGCGGGCCAGCc -3'
miRNA:   3'- -GCUGGGCUGGCUGUCGCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 41574 0.8 0.044448
Target:  5'- gCGaACUCGG-CGACGGUGCGGGCCAGUc -3'
miRNA:   3'- -GC-UGGGCUgGCUGUCGCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 51229 0.78 0.055402
Target:  5'- aGGCUCGGCCaucGACAG-GCGGGCCAGg -3'
miRNA:   3'- gCUGGGCUGG---CUGUCgCGCCCGGUCg -5'
19631 5' -62.3 NC_004686.1 + 30373 0.74 0.118141
Target:  5'- uGAUCUGucCCGGC--CGCGGGCCGGCg -3'
miRNA:   3'- gCUGGGCu-GGCUGucGCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 12148 0.73 0.124563
Target:  5'- uCGGCgCCGGCgGuCAGgcCGCGGGgCCAGCg -3'
miRNA:   3'- -GCUG-GGCUGgCuGUC--GCGCCC-GGUCG- -5'
19631 5' -62.3 NC_004686.1 + 16992 0.73 0.134804
Target:  5'- gGGCCUGGCCGcCG--GCGGGUCGGCg -3'
miRNA:   3'- gCUGGGCUGGCuGUcgCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 25931 0.72 0.161772
Target:  5'- -uGCCCGACCGGCAGCaGCcuGGGaCCAc- -3'
miRNA:   3'- gcUGGGCUGGCUGUCG-CG--CCC-GGUcg -5'
19631 5' -62.3 NC_004686.1 + 39207 0.72 0.161772
Target:  5'- cCGACCCG-CCGGCGGC-CaGGCCcGUg -3'
miRNA:   3'- -GCUGGGCuGGCUGUCGcGcCCGGuCG- -5'
19631 5' -62.3 NC_004686.1 + 28581 0.71 0.174754
Target:  5'- uGAuCCCGACCGGCAGCGUu-GUCAGa -3'
miRNA:   3'- gCU-GGGCUGGCUGUCGCGccCGGUCg -5'
19631 5' -62.3 NC_004686.1 + 53313 0.7 0.21399
Target:  5'- cCGAUUCGAUgCGGCcacGCGaaCGGGCCAGCu -3'
miRNA:   3'- -GCUGGGCUG-GCUGu--CGC--GCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 19885 0.7 0.230554
Target:  5'- gGGCauGGCCGAUGGUGCGgGGCCuGGUg -3'
miRNA:   3'- gCUGggCUGGCUGUCGCGC-CCGG-UCG- -5'
19631 5' -62.3 NC_004686.1 + 14507 0.69 0.236311
Target:  5'- gCGAUCCGgaGCCG-UGGCGCGGcGCCAa- -3'
miRNA:   3'- -GCUGGGC--UGGCuGUCGCGCC-CGGUcg -5'
19631 5' -62.3 NC_004686.1 + 47317 0.69 0.240412
Target:  5'- aCGACCCGugguuuccgcaGCCGaACcgcgccaccgucgaGGCGUGGGCUgAGCa -3'
miRNA:   3'- -GCUGGGC-----------UGGC-UG--------------UCGCGCCCGG-UCG- -5'
19631 5' -62.3 NC_004686.1 + 24422 0.69 0.242188
Target:  5'- uGACgCCGACUGACGauagucGgGCGuGGCgGGCg -3'
miRNA:   3'- gCUG-GGCUGGCUGU------CgCGC-CCGgUCG- -5'
19631 5' -62.3 NC_004686.1 + 3523 0.69 0.242188
Target:  5'- gGGCCaUGGCCGACAaacgccGCGUucaGGGCCgcGGCa -3'
miRNA:   3'- gCUGG-GCUGGCUGU------CGCG---CCCGG--UCG- -5'
19631 5' -62.3 NC_004686.1 + 37699 0.69 0.248187
Target:  5'- uCGGCuCCGACuUGGCGGCaCGauaggugauGGCCAGCg -3'
miRNA:   3'- -GCUG-GGCUG-GCUGUCGcGC---------CCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 37479 0.69 0.25062
Target:  5'- aCGACCUGcaccucgaacucgucGCUGAUcuCGCGGGgCAGCg -3'
miRNA:   3'- -GCUGGGC---------------UGGCUGucGCGCCCgGUCG- -5'
19631 5' -62.3 NC_004686.1 + 40261 0.69 0.258665
Target:  5'- gGACCCGaACUGAggucgaggugaccuCAGCgGCcGGCCAGUa -3'
miRNA:   3'- gCUGGGC-UGGCU--------------GUCG-CGcCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 15687 0.69 0.260552
Target:  5'- uGGCCCGGCUGacgccGCAGCaGCaGGCCgaAGUg -3'
miRNA:   3'- gCUGGGCUGGC-----UGUCG-CGcCCGG--UCG- -5'
19631 5' -62.3 NC_004686.1 + 44052 0.68 0.280034
Target:  5'- gCGGCCUGACCGcCGGCGCcgaaacuGCCcGCc -3'
miRNA:   3'- -GCUGGGCUGGCuGUCGCGcc-----CGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.