miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19631 5' -62.3 NC_004686.1 + 8623 1.1 0.000231
Target:  5'- gCGACCCGACCGACAGCGCGGGCCAGCc -3'
miRNA:   3'- -GCUGGGCUGGCUGUCGCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 40505 0.66 0.377723
Target:  5'- uCGGCCUG-CUGcuGCGGCGUcagccGGGCCAccGCa -3'
miRNA:   3'- -GCUGGGCuGGC--UGUCGCG-----CCCGGU--CG- -5'
19631 5' -62.3 NC_004686.1 + 13259 0.66 0.386124
Target:  5'- aGAgCCG-CCGAgAGCcCGGGgCCuGCg -3'
miRNA:   3'- gCUgGGCuGGCUgUCGcGCCC-GGuCG- -5'
19631 5' -62.3 NC_004686.1 + 33441 0.66 0.403294
Target:  5'- uGACCaccgguGACCgcGAUAGcCGCGGcGCCGGg -3'
miRNA:   3'- gCUGGg-----CUGG--CUGUC-GCGCC-CGGUCg -5'
19631 5' -62.3 NC_004686.1 + 39207 0.72 0.161772
Target:  5'- cCGACCCG-CCGGCGGC-CaGGCCcGUg -3'
miRNA:   3'- -GCUGGGCuGGCUGUCGcGcCCGGuCG- -5'
19631 5' -62.3 NC_004686.1 + 28581 0.71 0.174754
Target:  5'- uGAuCCCGACCGGCAGCGUu-GUCAGa -3'
miRNA:   3'- gCU-GGGCUGGCUGUCGCGccCGGUCg -5'
19631 5' -62.3 NC_004686.1 + 37699 0.69 0.248187
Target:  5'- uCGGCuCCGACuUGGCGGCaCGauaggugauGGCCAGCg -3'
miRNA:   3'- -GCUG-GGCUG-GCUGUCGcGC---------CCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 37479 0.69 0.25062
Target:  5'- aCGACCUGcaccucgaacucgucGCUGAUcuCGCGGGgCAGCg -3'
miRNA:   3'- -GCUGGGC---------------UGGCUGucGCGCCCgGUCG- -5'
19631 5' -62.3 NC_004686.1 + 41991 0.68 0.289515
Target:  5'- uGACCgGACCuGCcacgagaaaGGCGCGGgggaacuggaaugcaGCCGGCa -3'
miRNA:   3'- gCUGGgCUGGcUG---------UCGCGCC---------------CGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 17229 0.67 0.361292
Target:  5'- -aACCUGGCCGGCuucacCGGuGCCAGCu -3'
miRNA:   3'- gcUGGGCUGGCUGucgc-GCC-CGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 163 0.68 0.300657
Target:  5'- gCGACgCGGCCGGguuggcgggugcCGG-GCGGGUgGGCg -3'
miRNA:   3'- -GCUGgGCUGGCU------------GUCgCGCCCGgUCG- -5'
19631 5' -62.3 NC_004686.1 + 44052 0.68 0.280034
Target:  5'- gCGGCCUGACCGcCGGCGCcgaaacuGCCcGCc -3'
miRNA:   3'- -GCUGGGCUGGCuGUCGCGcc-----CGGuCG- -5'
19631 5' -62.3 NC_004686.1 + 41574 0.8 0.044448
Target:  5'- gCGaACUCGG-CGACGGUGCGGGCCAGUc -3'
miRNA:   3'- -GC-UGGGCUgGCUGUCGCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 33588 0.67 0.329949
Target:  5'- gCGAUCUGcCCGGCGGUGgGGGugaccaCCGGUc -3'
miRNA:   3'- -GCUGGGCuGGCUGUCGCgCCC------GGUCG- -5'
19631 5' -62.3 NC_004686.1 + 51229 0.78 0.055402
Target:  5'- aGGCUCGGCCaucGACAG-GCGGGCCAGg -3'
miRNA:   3'- gCUGGGCUGG---CUGUCgCGCCCGGUCg -5'
19631 5' -62.3 NC_004686.1 + 40261 0.69 0.258665
Target:  5'- gGACCCGaACUGAggucgaggugaccuCAGCgGCcGGCCAGUa -3'
miRNA:   3'- gCUGGGC-UGGCU--------------GUCG-CGcCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 29710 0.67 0.337593
Target:  5'- cCGGCCCacuccuuguGGCCGAUGaCGCGGGUggcaGGCa -3'
miRNA:   3'- -GCUGGG---------CUGGCUGUcGCGCCCGg---UCG- -5'
19631 5' -62.3 NC_004686.1 + 7964 0.66 0.386124
Target:  5'- uGACCCGACCgGGCAGCgGCuccCCGGa -3'
miRNA:   3'- gCUGGGCUGG-CUGUCG-CGcccGGUCg -5'
19631 5' -62.3 NC_004686.1 + 30373 0.74 0.118141
Target:  5'- uGAUCUGucCCGGC--CGCGGGCCGGCg -3'
miRNA:   3'- gCUGGGCu-GGCUGucGCGCCCGGUCG- -5'
19631 5' -62.3 NC_004686.1 + 24422 0.69 0.242188
Target:  5'- uGACgCCGACUGACGauagucGgGCGuGGCgGGCg -3'
miRNA:   3'- gCUG-GGCUGGCUGU------CgCGC-CCGgUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.