miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19632 3' -53.2 NC_004686.1 + 14065 0.66 0.809914
Target:  5'- cGGCUUGAUaaGUGUGUGGUGGaGUaCCGc -3'
miRNA:   3'- uUUGAGCUG--UACGCGCCACUaCA-GGC- -5'
19632 3' -53.2 NC_004686.1 + 45355 0.66 0.800204
Target:  5'- cAGCUUcuGCuuaGCgGCGGUGAUGUCCa -3'
miRNA:   3'- uUUGAGc-UGua-CG-CGCCACUACAGGc -5'
19632 3' -53.2 NC_004686.1 + 21976 0.66 0.800204
Target:  5'- cGGACUCGGCG-GCGCuGGcGGUG-CCa -3'
miRNA:   3'- -UUUGAGCUGUaCGCG-CCaCUACaGGc -5'
19632 3' -53.2 NC_004686.1 + 21833 0.66 0.800204
Target:  5'- --cCUCGGCGgcgcggGCGCGGgcgGcgGcUCCGg -3'
miRNA:   3'- uuuGAGCUGUa-----CGCGCCa--CuaC-AGGC- -5'
19632 3' -53.2 NC_004686.1 + 29518 0.66 0.790311
Target:  5'- gAGACUggCGGCGUGauUGGUGAUGgaaUCCGg -3'
miRNA:   3'- -UUUGA--GCUGUACgcGCCACUAC---AGGC- -5'
19632 3' -53.2 NC_004686.1 + 4216 0.66 0.790311
Target:  5'- gGGugUCGAUGU-CGCGGaUGAUGUCg- -3'
miRNA:   3'- -UUugAGCUGUAcGCGCC-ACUACAGgc -5'
19632 3' -53.2 NC_004686.1 + 28752 0.67 0.73852
Target:  5'- -cGCUUGGgGgGCGCGGUGAUG-CgCGg -3'
miRNA:   3'- uuUGAGCUgUaCGCGCCACUACaG-GC- -5'
19632 3' -53.2 NC_004686.1 + 26539 0.68 0.695014
Target:  5'- gGAAcCUCGACAUGuCGUGGUuccgcggcGAaGUCCGc -3'
miRNA:   3'- -UUU-GAGCUGUAC-GCGCCA--------CUaCAGGC- -5'
19632 3' -53.2 NC_004686.1 + 29022 0.69 0.650495
Target:  5'- ----aCGGCAa-CGCGGUGGUGUCCc -3'
miRNA:   3'- uuugaGCUGUacGCGCCACUACAGGc -5'
19632 3' -53.2 NC_004686.1 + 41575 0.71 0.550277
Target:  5'- cGAACUCGGCGacgGUGCGGgccaGUCCGu -3'
miRNA:   3'- -UUUGAGCUGUa--CGCGCCacuaCAGGC- -5'
19632 3' -53.2 NC_004686.1 + 6138 0.71 0.507093
Target:  5'- gAAGCUgauccUGAUcgGCGCGGUGAUGcgCUGg -3'
miRNA:   3'- -UUUGA-----GCUGuaCGCGCCACUACa-GGC- -5'
19632 3' -53.2 NC_004686.1 + 41804 0.72 0.475673
Target:  5'- uGGCUCGGgGUGCucuCGG-GGUGUCCGg -3'
miRNA:   3'- uUUGAGCUgUACGc--GCCaCUACAGGC- -5'
19632 3' -53.2 NC_004686.1 + 37635 0.74 0.37878
Target:  5'- cGGACaUUGGCGUagcaCGCGGUGAUGUCCu -3'
miRNA:   3'- -UUUG-AGCUGUAc---GCGCCACUACAGGc -5'
19632 3' -53.2 NC_004686.1 + 4067 0.82 0.12402
Target:  5'- ---gUCGACcUGUGCGGUGAUGUCCu -3'
miRNA:   3'- uuugAGCUGuACGCGCCACUACAGGc -5'
19632 3' -53.2 NC_004686.1 + 8130 1.06 0.002443
Target:  5'- aAAACUCGACAUGCGCGGUGAUGUCCGu -3'
miRNA:   3'- -UUUGAGCUGUACGCGCCACUACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.