Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19634 | 5' | -57.8 | NC_004686.1 | + | 2504 | 0.66 | 0.552805 |
Target: 5'- aUUGUcaUGCCGCuCGGaGAcgGAGCAGaUCAg -3' miRNA: 3'- -AGCG--ACGGCG-GCC-CUuaCUUGUC-GGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 2882 | 0.67 | 0.470083 |
Target: 5'- -gGUUGCaggaCGCCGGGGugcGUGAACuGGCCc -3' miRNA: 3'- agCGACG----GCGGCCCU---UACUUG-UCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 4968 | 0.69 | 0.394138 |
Target: 5'- uUCGUgGCUGCCGGGGAucaUGAGUGGUCGc -3' miRNA: 3'- -AGCGaCGGCGGCCCUU---ACUUGUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 7153 | 1.08 | 0.000604 |
Target: 5'- cUCGCUGCCGCCGGGAAUGAACAGCCAc -3' miRNA: 3'- -AGCGACGGCGGCCCUUACUUGUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 8454 | 0.69 | 0.394138 |
Target: 5'- gUCGUUGCCGCggUGGGAcuuccucgAUGA--GGCCAg -3' miRNA: 3'- -AGCGACGGCG--GCCCU--------UACUugUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 9477 | 0.69 | 0.41609 |
Target: 5'- aCGCUGCCguguugaccauauccGCUgguGGGAGUGGAUauuuguGGCCAa -3' miRNA: 3'- aGCGACGG---------------CGG---CCCUUACUUG------UCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 10766 | 0.69 | 0.385216 |
Target: 5'- gUCGUUgGuuGuuGGGGuaugccagaAUGAACAGCCGc -3' miRNA: 3'- -AGCGA-CggCggCCCU---------UACUUGUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 12533 | 0.66 | 0.56349 |
Target: 5'- -gGCUGCCagccaGCCGGuGAccccgGAGCAGaCCGa -3' miRNA: 3'- agCGACGG-----CGGCC-CUua---CUUGUC-GGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 17146 | 0.67 | 0.509713 |
Target: 5'- -gGCUGcCCGCCcucagucGGAGUGGgaagccgcgaugcGCGGCCAa -3' miRNA: 3'- agCGAC-GGCGGc------CCUUACU-------------UGUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 17904 | 0.67 | 0.510748 |
Target: 5'- gUGUUgaGCUGUCGGGggUGuAugAGCCu -3' miRNA: 3'- aGCGA--CGGCGGCCCuuAC-UugUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 27509 | 0.67 | 0.487173 |
Target: 5'- aCGCUGCaacgcaucauucacCGCUGuGGAGUGcGCAGUCu -3' miRNA: 3'- aGCGACG--------------GCGGC-CCUUACuUGUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 27623 | 0.72 | 0.268036 |
Target: 5'- aCGCUGCCgGUCGGGAucaGACGGCg- -3' miRNA: 3'- aGCGACGG-CGGCCCUuacUUGUCGgu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 30272 | 0.67 | 0.480099 |
Target: 5'- gCGCUGCUGCCGGucGGGcauuccguUGGGCAGUUu -3' miRNA: 3'- aGCGACGGCGGCC--CUU--------ACUUGUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 33138 | 0.67 | 0.470083 |
Target: 5'- gUUGCcuaUGCCGCCGGGGc----UAGCCAc -3' miRNA: 3'- -AGCG---ACGGCGGCCCUuacuuGUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 33529 | 0.75 | 0.150125 |
Target: 5'- aCGCUGCCGCCGGuucGAUGAuGCGGgCCu -3' miRNA: 3'- aGCGACGGCGGCCc--UUACU-UGUC-GGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 33630 | 0.71 | 0.274867 |
Target: 5'- -gGCUgGCCGCCGGuGAugGUGAggGCGGCUg -3' miRNA: 3'- agCGA-CGGCGGCC-CU--UACU--UGUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 33907 | 0.67 | 0.490219 |
Target: 5'- gUUGUUGCCGCCGcugauGGuguuguguUGGACAGCUu -3' miRNA: 3'- -AGCGACGGCGGC-----CCuu------ACUUGUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 34024 | 0.66 | 0.552805 |
Target: 5'- cCGUUGCCGCCGGaaaaaccAGUGGcaucgaGGCCGg -3' miRNA: 3'- aGCGACGGCGGCCc------UUACUug----UCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 36318 | 0.68 | 0.450376 |
Target: 5'- -aGCUgGUCGCCGaGGu-UGAGCGGCUg -3' miRNA: 3'- agCGA-CGGCGGC-CCuuACUUGUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 38837 | 0.7 | 0.359263 |
Target: 5'- aCGCcGCCcgcaagaucuGCUGGGAAUGccccguGCAGCCGc -3' miRNA: 3'- aGCGaCGG----------CGGCCCUUACu-----UGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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