Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19634 | 5' | -57.8 | NC_004686.1 | + | 41363 | 0.69 | 0.366919 |
Target: 5'- cUCGCUGCUGCUGcGGAggugaccgaaugaGUGAcccgACuGCCAc -3' miRNA: 3'- -AGCGACGGCGGC-CCU-------------UACU----UGuCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 38837 | 0.7 | 0.359263 |
Target: 5'- aCGCcGCCcgcaagaucuGCUGGGAAUGccccguGCAGCCGc -3' miRNA: 3'- aGCGaCGG----------CGGCCCUUACu-----UGUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 39640 | 0.7 | 0.350888 |
Target: 5'- aUGC-GCCGCCGGuGGUGGugAGUCGu -3' miRNA: 3'- aGCGaCGGCGGCCcUUACUugUCGGU- -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 33630 | 0.71 | 0.274867 |
Target: 5'- -gGCUgGCCGCCGGuGAugGUGAggGCGGCUg -3' miRNA: 3'- agCGA-CGGCGGCC-CU--UACU--UGUCGGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 27623 | 0.72 | 0.268036 |
Target: 5'- aCGCUGCCgGUCGGGAucaGACGGCg- -3' miRNA: 3'- aGCGACGG-CGGCCCUuacUUGUCGgu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 33529 | 0.75 | 0.150125 |
Target: 5'- aCGCUGCCGCCGGuucGAUGAuGCGGgCCu -3' miRNA: 3'- aGCGACGGCGGCCc--UUACU-UGUC-GGu -5' |
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19634 | 5' | -57.8 | NC_004686.1 | + | 7153 | 1.08 | 0.000604 |
Target: 5'- cUCGCUGCCGCCGGGAAUGAACAGCCAc -3' miRNA: 3'- -AGCGACGGCGGCCCUUACUUGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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