miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19634 5' -57.8 NC_004686.1 + 41363 0.69 0.366919
Target:  5'- cUCGCUGCUGCUGcGGAggugaccgaaugaGUGAcccgACuGCCAc -3'
miRNA:   3'- -AGCGACGGCGGC-CCU-------------UACU----UGuCGGU- -5'
19634 5' -57.8 NC_004686.1 + 38837 0.7 0.359263
Target:  5'- aCGCcGCCcgcaagaucuGCUGGGAAUGccccguGCAGCCGc -3'
miRNA:   3'- aGCGaCGG----------CGGCCCUUACu-----UGUCGGU- -5'
19634 5' -57.8 NC_004686.1 + 39640 0.7 0.350888
Target:  5'- aUGC-GCCGCCGGuGGUGGugAGUCGu -3'
miRNA:   3'- aGCGaCGGCGGCCcUUACUugUCGGU- -5'
19634 5' -57.8 NC_004686.1 + 33630 0.71 0.274867
Target:  5'- -gGCUgGCCGCCGGuGAugGUGAggGCGGCUg -3'
miRNA:   3'- agCGA-CGGCGGCC-CU--UACU--UGUCGGu -5'
19634 5' -57.8 NC_004686.1 + 27623 0.72 0.268036
Target:  5'- aCGCUGCCgGUCGGGAucaGACGGCg- -3'
miRNA:   3'- aGCGACGG-CGGCCCUuacUUGUCGgu -5'
19634 5' -57.8 NC_004686.1 + 33529 0.75 0.150125
Target:  5'- aCGCUGCCGCCGGuucGAUGAuGCGGgCCu -3'
miRNA:   3'- aGCGACGGCGGCCc--UUACU-UGUC-GGu -5'
19634 5' -57.8 NC_004686.1 + 7153 1.08 0.000604
Target:  5'- cUCGCUGCCGCCGGGAAUGAACAGCCAc -3'
miRNA:   3'- -AGCGACGGCGGCCCUUACUUGUCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.