Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19635 | 3' | -53.4 | NC_004686.1 | + | 40286 | 0.66 | 0.829718 |
Target: 5'- uCGcgUGAGUGcCGUUCGUgUgGUCgGCACu -3' miRNA: 3'- -GCa-ACUCGC-GCAAGCGaAgCAG-CGUG- -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 2641 | 0.66 | 0.828807 |
Target: 5'- gGUUGAGCG-GUUCGCgcugccggccgguUUgGUUGCGg -3' miRNA: 3'- gCAACUCGCgCAAGCG-------------AAgCAGCGUg -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 30542 | 0.66 | 0.811111 |
Target: 5'- ---cGGGuCGCGUUCaGCUUCGUaGCGg -3' miRNA: 3'- gcaaCUC-GCGCAAG-CGAAGCAgCGUg -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 29765 | 0.67 | 0.751056 |
Target: 5'- ---cGAGCGCag-CGCaggUGUCGCGCa -3' miRNA: 3'- gcaaCUCGCGcaaGCGaa-GCAGCGUG- -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 41684 | 0.68 | 0.729929 |
Target: 5'- ---aGGGCGCGUUCGUUgaCGUCGa-- -3' miRNA: 3'- gcaaCUCGCGCAAGCGAa-GCAGCgug -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 21391 | 0.68 | 0.708404 |
Target: 5'- aGUUGGGgGCGgugucuggUGCUcggCGUCGUGCg -3' miRNA: 3'- gCAACUCgCGCaa------GCGAa--GCAGCGUG- -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 4670 | 0.69 | 0.664532 |
Target: 5'- gCGUUGAGCGCGUcccaCGCcgCGaUC-CACg -3' miRNA: 3'- -GCAACUCGCGCAa---GCGaaGC-AGcGUG- -5' |
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19635 | 3' | -53.4 | NC_004686.1 | + | 6876 | 1.11 | 0.001264 |
Target: 5'- gCGUUGAGCGCGUUCGCUUCGUCGCACg -3' miRNA: 3'- -GCAACUCGCGCAAGCGAAGCAGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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