miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19636 5' -54.2 NC_004686.1 + 21479 0.66 0.796585
Target:  5'- uGAUGU--UUCGGcGUUG--UCGGGGCg -3'
miRNA:   3'- -CUACAugAAGCCuCGACcuAGCCCCG- -5'
19636 5' -54.2 NC_004686.1 + 21361 0.66 0.786744
Target:  5'- aGAUGU-UUUCGGcGGCuuaUGGGUCgucggaguugGGGGCg -3'
miRNA:   3'- -CUACAuGAAGCC-UCG---ACCUAG----------CCCCG- -5'
19636 5' -54.2 NC_004686.1 + 41772 0.66 0.786744
Target:  5'- gGAUG-ACU-CGGAugugacgaucGCUGGGuuguuggcUCGGGGUg -3'
miRNA:   3'- -CUACaUGAaGCCU----------CGACCU--------AGCCCCG- -5'
19636 5' -54.2 NC_004686.1 + 11793 0.66 0.776739
Target:  5'- cAUGUA---UGGGGCUGGggCGaaGGGCg -3'
miRNA:   3'- cUACAUgaaGCCUCGACCuaGC--CCCG- -5'
19636 5' -54.2 NC_004686.1 + 262 0.66 0.756287
Target:  5'- cAUGUGCUgauggcgCGGucgaUGGAUgugCGGGGCg -3'
miRNA:   3'- cUACAUGAa------GCCucg-ACCUA---GCCCCG- -5'
19636 5' -54.2 NC_004686.1 + 51498 0.67 0.73532
Target:  5'- cGAUGUcugauGCUcgugUgGGGGCgUGGAUCGcGGCg -3'
miRNA:   3'- -CUACA-----UGA----AgCCUCG-ACCUAGCcCCG- -5'
19636 5' -54.2 NC_004686.1 + 22674 0.67 0.724673
Target:  5'- cGGUGaagucgUCGGAGCUGagcUGGGGCa -3'
miRNA:   3'- -CUACauga--AGCCUCGACcuaGCCCCG- -5'
19636 5' -54.2 NC_004686.1 + 4621 0.68 0.648176
Target:  5'- ---aUACUcgUCGGGGUcuUGGAU-GGGGCa -3'
miRNA:   3'- cuacAUGA--AGCCUCG--ACCUAgCCCCG- -5'
19636 5' -54.2 NC_004686.1 + 31553 0.69 0.603889
Target:  5'- uGAUGUG-UUCGGGGCUGG-UCacGGCa -3'
miRNA:   3'- -CUACAUgAAGCCUCGACCuAGccCCG- -5'
19636 5' -54.2 NC_004686.1 + 18120 0.69 0.592855
Target:  5'- ----cACUUugCGGGGCacGGUCGGGGCg -3'
miRNA:   3'- cuacaUGAA--GCCUCGacCUAGCCCCG- -5'
19636 5' -54.2 NC_004686.1 + 6429 1.13 0.000714
Target:  5'- cGAUGUACUUCGGAGCUGGAUCGGGGCa -3'
miRNA:   3'- -CUACAUGAAGCCUCGACCUAGCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.