miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19638 5' -57.6 NC_004686.1 + 7288 0.66 0.555914
Target:  5'- gGGCggCGGCCAgauUCCGuGCGCCGucCGCc- -3'
miRNA:   3'- -UCGuaGUCGGU---AGGC-UGCGGU--GCGua -5'
19638 5' -57.6 NC_004686.1 + 20899 0.66 0.553758
Target:  5'- cGGCAgccUCAGCCAgcucauuccacgCCGACGCCGgaacCGaCAa -3'
miRNA:   3'- -UCGU---AGUCGGUa-----------GGCUGCGGU----GC-GUa -5'
19638 5' -57.6 NC_004686.1 + 15682 0.66 0.534471
Target:  5'- uGCggUGGCCcggCUGACGCCGCaGCAg -3'
miRNA:   3'- uCGuaGUCGGua-GGCUGCGGUG-CGUa -5'
19638 5' -57.6 NC_004686.1 + 16806 0.66 0.534471
Target:  5'- aAGCAccaUCGGCCAgcaUCCG-CGCCGCu--- -3'
miRNA:   3'- -UCGU---AGUCGGU---AGGCuGCGGUGcgua -5'
19638 5' -57.6 NC_004686.1 + 4668 0.66 0.534471
Target:  5'- cGGCGUUgAGCgCGUCCcACGCCGCGa-- -3'
miRNA:   3'- -UCGUAG-UCG-GUAGGcUGCGGUGCgua -5'
19638 5' -57.6 NC_004686.1 + 28447 0.66 0.523858
Target:  5'- uGGCGUCGaacaacGCCAUCaCGAUGCCGaGCc- -3'
miRNA:   3'- -UCGUAGU------CGGUAG-GCUGCGGUgCGua -5'
19638 5' -57.6 NC_004686.1 + 22493 0.66 0.523858
Target:  5'- -uCAUCGGCCAguUCCGucguACGCCcACGCc- -3'
miRNA:   3'- ucGUAGUCGGU--AGGC----UGCGG-UGCGua -5'
19638 5' -57.6 NC_004686.1 + 50438 0.66 0.522801
Target:  5'- cGCAUCGGUCGacaugaugCCGAUGCCguacacaaccucaGCGCGg -3'
miRNA:   3'- uCGUAGUCGGUa-------GGCUGCGG-------------UGCGUa -5'
19638 5' -57.6 NC_004686.1 + 36617 0.67 0.492534
Target:  5'- aAGCGUUGGCggaGUUCGACGCgAgGCAg -3'
miRNA:   3'- -UCGUAGUCGg--UAGGCUGCGgUgCGUa -5'
19638 5' -57.6 NC_004686.1 + 13213 0.68 0.423125
Target:  5'- cGCAUgcccaCAGcCCGUUgGACGCCACGUu- -3'
miRNA:   3'- uCGUA-----GUC-GGUAGgCUGCGGUGCGua -5'
19638 5' -57.6 NC_004686.1 + 30895 0.68 0.413693
Target:  5'- aGGCgAUCAGCCA----ACGCCACGUAg -3'
miRNA:   3'- -UCG-UAGUCGGUaggcUGCGGUGCGUa -5'
19638 5' -57.6 NC_004686.1 + 3517 0.68 0.413693
Target:  5'- cGCGUCgGGCCAUggCCGAcaaaCGCCGCGUu- -3'
miRNA:   3'- uCGUAG-UCGGUA--GGCU----GCGGUGCGua -5'
19638 5' -57.6 NC_004686.1 + 34067 0.7 0.318977
Target:  5'- cAGCGgu-GCCG-CCGAgGCCGCGCGc -3'
miRNA:   3'- -UCGUaguCGGUaGGCUgCGGUGCGUa -5'
19638 5' -57.6 NC_004686.1 + 27075 0.72 0.253665
Target:  5'- aAGCG-CGGCCcgCCGACGCCgaucccgACGCu- -3'
miRNA:   3'- -UCGUaGUCGGuaGGCUGCGG-------UGCGua -5'
19638 5' -57.6 NC_004686.1 + 40714 0.74 0.175533
Target:  5'- uGGCAUC-GCCAaCUGucCGCCACGCAUa -3'
miRNA:   3'- -UCGUAGuCGGUaGGCu-GCGGUGCGUA- -5'
19638 5' -57.6 NC_004686.1 + 5696 1.05 0.000966
Target:  5'- cAGCAUCAGCCAUCCGACGCCACGCAUc -3'
miRNA:   3'- -UCGUAGUCGGUAGGCUGCGGUGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.