miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19639 5' -57.9 NC_004686.1 + 35113 0.66 0.601117
Target:  5'- -aAGCCguucaaGCGGUGGAUGAcucauGAGguguUGCCg -3'
miRNA:   3'- ugUCGGag----CGCCGCCUGCU-----CUU----ACGG- -5'
19639 5' -57.9 NC_004686.1 + 53101 0.66 0.590382
Target:  5'- cCGGgCUCGCGGCGG---GGAAcUGCUu -3'
miRNA:   3'- uGUCgGAGCGCCGCCugcUCUU-ACGG- -5'
19639 5' -57.9 NC_004686.1 + 8765 0.66 0.590382
Target:  5'- aGCAG-UUCuCGGUGGugGAGAAcUGCa -3'
miRNA:   3'- -UGUCgGAGcGCCGCCugCUCUU-ACGg -5'
19639 5' -57.9 NC_004686.1 + 21831 0.66 0.590382
Target:  5'- --cGCCUCgGCGGCgcGGGCGcGGGcgGCg -3'
miRNA:   3'- uguCGGAG-CGCCG--CCUGC-UCUuaCGg -5'
19639 5' -57.9 NC_004686.1 + 10147 0.66 0.579682
Target:  5'- cGCcGCCUUGgGGCGGcucgGCGcGAcguuacuugguGUGCCg -3'
miRNA:   3'- -UGuCGGAGCgCCGCC----UGCuCU-----------UACGG- -5'
19639 5' -57.9 NC_004686.1 + 12453 0.66 0.569023
Target:  5'- --cGCCgauggCGCGGCGGcCcAGGuugcGUGCCg -3'
miRNA:   3'- uguCGGa----GCGCCGCCuGcUCU----UACGG- -5'
19639 5' -57.9 NC_004686.1 + 18823 0.66 0.558413
Target:  5'- -aAGUCgacgGCGGCGGugcgcgACGAGAccGCCa -3'
miRNA:   3'- ugUCGGag--CGCCGCC------UGCUCUuaCGG- -5'
19639 5' -57.9 NC_004686.1 + 20342 0.66 0.558413
Target:  5'- uCAGCCUCGUuuugagGGCGGuGCGug---GCCg -3'
miRNA:   3'- uGUCGGAGCG------CCGCC-UGCucuuaCGG- -5'
19639 5' -57.9 NC_004686.1 + 19768 0.66 0.555241
Target:  5'- gGCGGguaacgaguccgaaCCUucUGCGGUGGugGAGGucGCCa -3'
miRNA:   3'- -UGUC--------------GGA--GCGCCGCCugCUCUuaCGG- -5'
19639 5' -57.9 NC_004686.1 + 35479 0.67 0.54786
Target:  5'- --cGUCUCGCGGagaaGGugGcGAA-GCCg -3'
miRNA:   3'- uguCGGAGCGCCg---CCugCuCUUaCGG- -5'
19639 5' -57.9 NC_004686.1 + 21894 0.67 0.54786
Target:  5'- gGCGGCggCgGUGGCGGugGc-GGUGCCu -3'
miRNA:   3'- -UGUCGgaG-CGCCGCCugCucUUACGG- -5'
19639 5' -57.9 NC_004686.1 + 53295 0.67 0.537371
Target:  5'- -uGGCCUuCGCGGCGGGCcAGuucacGCa -3'
miRNA:   3'- ugUCGGA-GCGCCGCCUGcUCuua--CGg -5'
19639 5' -57.9 NC_004686.1 + 9013 0.67 0.537371
Target:  5'- --cGCUUCGcCGGCGG-UGAGGuUGCUu -3'
miRNA:   3'- uguCGGAGC-GCCGCCuGCUCUuACGG- -5'
19639 5' -57.9 NC_004686.1 + 5519 0.67 0.537371
Target:  5'- cCGGCCUgaaCGCGGCGGuguCGGacaccguccguGGcgGCCc -3'
miRNA:   3'- uGUCGGA---GCGCCGCCu--GCU-----------CUuaCGG- -5'
19639 5' -57.9 NC_004686.1 + 5033 0.67 0.526952
Target:  5'- --cGCCUCGCGGCGaGGuCGucgguGAagGUGCUc -3'
miRNA:   3'- uguCGGAGCGCCGC-CU-GCu----CU--UACGG- -5'
19639 5' -57.9 NC_004686.1 + 4704 0.67 0.516609
Target:  5'- cGCAGaCCgCGCcGCGGAgcaGGcGAAUGCCg -3'
miRNA:   3'- -UGUC-GGaGCGcCGCCUg--CU-CUUACGG- -5'
19639 5' -57.9 NC_004686.1 + 17572 0.68 0.486098
Target:  5'- uCAGUCcaucaacuugUUGuCGGCGGGCGAGuuUGCUu -3'
miRNA:   3'- uGUCGG----------AGC-GCCGCCUGCUCuuACGG- -5'
19639 5' -57.9 NC_004686.1 + 24436 0.68 0.46624
Target:  5'- gAUAGUCgggCGUGGCGGGCGuu-GUGUg -3'
miRNA:   3'- -UGUCGGa--GCGCCGCCUGCucuUACGg -5'
19639 5' -57.9 NC_004686.1 + 24154 0.68 0.45647
Target:  5'- cAUGGCUgugggaaaGCGGUGGAUGGGGugugGCCg -3'
miRNA:   3'- -UGUCGGag------CGCCGCCUGCUCUua--CGG- -5'
19639 5' -57.9 NC_004686.1 + 51169 0.68 0.44681
Target:  5'- gACGaCCUCGCcGCGaGGCGGGGcgGUCa -3'
miRNA:   3'- -UGUcGGAGCGcCGC-CUGCUCUuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.