Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19641 | 3' | -52.3 | NC_004686.1 | + | 28979 | 0.66 | 0.865068 |
Target: 5'- aCGUUGGUGGugugucagGGGUGUgugUCGGcguGGGGUg -3' miRNA: 3'- aGCAGCCACU--------UCCACG---AGUCu--UCUCG- -5' |
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19641 | 3' | -52.3 | NC_004686.1 | + | 18262 | 0.66 | 0.848119 |
Target: 5'- cUCGUUGGUGGguugguGGGUcaGCacggCAGcGGGGCg -3' miRNA: 3'- -AGCAGCCACU------UCCA--CGa---GUCuUCUCG- -5' |
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19641 | 3' | -52.3 | NC_004686.1 | + | 16350 | 0.67 | 0.839288 |
Target: 5'- -aGUCGGUGAcGGUGgcgaUUCAGcaucGGGCg -3' miRNA: 3'- agCAGCCACUuCCAC----GAGUCuu--CUCG- -5' |
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19641 | 3' | -52.3 | NC_004686.1 | + | 9742 | 0.67 | 0.80181 |
Target: 5'- -aGUCGGUGAAGGgcaccGCUUuc--GGGCu -3' miRNA: 3'- agCAGCCACUUCCa----CGAGucuuCUCG- -5' |
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19641 | 3' | -52.3 | NC_004686.1 | + | 45103 | 0.68 | 0.791954 |
Target: 5'- aUCGgCGGUGAGcauGUGCUCGccgGGGGCa -3' miRNA: 3'- -AGCaGCCACUUc--CACGAGUcu-UCUCG- -5' |
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19641 | 3' | -52.3 | NC_004686.1 | + | 1632 | 0.69 | 0.696904 |
Target: 5'- gUCGUCGGgGAAGGUGaacgUUGGcAGGGUg -3' miRNA: 3'- -AGCAGCCaCUUCCACg---AGUCuUCUCG- -5' |
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19641 | 3' | -52.3 | NC_004686.1 | + | 5047 | 1.14 | 0.001021 |
Target: 5'- gUCGUCGGUGAAGGUGCUCAGAAGAGCg -3' miRNA: 3'- -AGCAGCCACUUCCACGAGUCUUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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