miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19641 5' -58.1 NC_004686.1 + 5502 0.66 0.587319
Target:  5'- -gGACG-UCGCUUCCuUCGCCgGCCu- -3'
miRNA:   3'- cgCUGCaAGCGAGGGcAGUGG-CGGua -5'
19641 5' -58.1 NC_004686.1 + 31678 0.66 0.566043
Target:  5'- uCGAC---CGCagcaCCGUCGCCGCCGUa -3'
miRNA:   3'- cGCUGcaaGCGag--GGCAGUGGCGGUA- -5'
19641 5' -58.1 NC_004686.1 + 28040 0.66 0.566043
Target:  5'- aGCGGUGUUgGCgUCCGUCGgcaucuCCGCCGUa -3'
miRNA:   3'- -CGCUGCAAgCGaGGGCAGU------GGCGGUA- -5'
19641 5' -58.1 NC_004686.1 + 38061 0.66 0.555477
Target:  5'- uCGugGUUC-CgCCCGUUccuGCCGCCGc -3'
miRNA:   3'- cGCugCAAGcGaGGGCAG---UGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 12179 0.66 0.551267
Target:  5'- gGCGGCGUUCGCaaUCGgguugggugcuaaCGCCGCUAa -3'
miRNA:   3'- -CGCUGCAAGCGagGGCa------------GUGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 18831 0.66 0.544971
Target:  5'- gGCGGCGgugCGCga-CGagACCGCCAa -3'
miRNA:   3'- -CGCUGCaa-GCGaggGCagUGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 33884 0.67 0.534529
Target:  5'- cCGGCGgggccgUCGCUgguUCCGUUguuGCCGCCGc -3'
miRNA:   3'- cGCUGCa-----AGCGA---GGGCAG---UGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 9863 0.67 0.493538
Target:  5'- cGCGGCGaUCGCUCaaaCGUCGCuCGaCGa -3'
miRNA:   3'- -CGCUGCaAGCGAGg--GCAGUG-GCgGUa -5'
19641 5' -58.1 NC_004686.1 + 19750 0.67 0.483512
Target:  5'- -aGACGUUUGCcaccaugggCCU-UCACCGCCAUg -3'
miRNA:   3'- cgCUGCAAGCGa--------GGGcAGUGGCGGUA- -5'
19641 5' -58.1 NC_004686.1 + 6882 0.68 0.463762
Target:  5'- aGCG-CGUUCGCU-UCGUCGCaCGUCGg -3'
miRNA:   3'- -CGCuGCAAGCGAgGGCAGUG-GCGGUa -5'
19641 5' -58.1 NC_004686.1 + 47108 0.68 0.451153
Target:  5'- cGCGuugccaGUUCGCUCCCuGcaacgucaccagaaUCAUCGCCAg -3'
miRNA:   3'- -CGCug----CAAGCGAGGG-C--------------AGUGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 20016 0.69 0.425582
Target:  5'- aGCGACGaaacCGUUCaCgGcCACCGCCGUg -3'
miRNA:   3'- -CGCUGCaa--GCGAG-GgCaGUGGCGGUA- -5'
19641 5' -58.1 NC_004686.1 + 8343 0.69 0.416332
Target:  5'- aGCGACuUUCacaccCUCCCccuuGUCGCCGCCGc -3'
miRNA:   3'- -CGCUGcAAGc----GAGGG----CAGUGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 51529 0.69 0.389337
Target:  5'- cGCGGCGUgggacgCGCUCaa--CGCCGCCAc -3'
miRNA:   3'- -CGCUGCAa-----GCGAGggcaGUGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 54528 0.72 0.246476
Target:  5'- uGUGGCGUUga-UCCCGUaCGCCGCCAc -3'
miRNA:   3'- -CGCUGCAAgcgAGGGCA-GUGGCGGUa -5'
19641 5' -58.1 NC_004686.1 + 5082 1.07 0.000866
Target:  5'- gGCGACGUUCGCUCCCGUCACCGCCAUc -3'
miRNA:   3'- -CGCUGCAAGCGAGGGCAGUGGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.