Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19642 | 5' | -51.9 | NC_004686.1 | + | 5296 | 1.11 | 0.001715 |
Target: 5'- aAGAUCCUCGACACCACCAACAUCGUCg -3' miRNA: 3'- -UCUAGGAGCUGUGGUGGUUGUAGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 55214 | 0.81 | 0.173388 |
Target: 5'- -aGUCCaUCGGCGCCGUCAACAUCGUCu -3' miRNA: 3'- ucUAGG-AGCUGUGGUGGUUGUAGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 34208 | 0.74 | 0.426093 |
Target: 5'- cGGAauacgCCUUGGCACCGCCAGCGcCGcCg -3' miRNA: 3'- -UCUa----GGAGCUGUGGUGGUUGUaGCaG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 43853 | 0.72 | 0.540363 |
Target: 5'- cGGUCgUCGugGCCGCCGGCAUa--- -3' miRNA: 3'- uCUAGgAGCugUGGUGGUUGUAgcag -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 51967 | 0.72 | 0.573439 |
Target: 5'- ---gCCUCGACGCCGUCGACAUCaUCc -3' miRNA: 3'- ucuaGGAGCUGUGGUGGUUGUAGcAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 3493 | 0.72 | 0.584576 |
Target: 5'- uGAUCggUUUGACACC-CCAGCAggcgCGUCg -3' miRNA: 3'- uCUAG--GAGCUGUGGuGGUUGUa---GCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 54598 | 0.7 | 0.663154 |
Target: 5'- uGGUCCcgCGGaacaACCGCCAGCGucucguUCGUCu -3' miRNA: 3'- uCUAGGa-GCUg---UGGUGGUUGU------AGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 36623 | 0.7 | 0.685495 |
Target: 5'- uGAUCCUCGAgaacgucuugccCACCAcaaccguuuCCGGCggCGUCg -3' miRNA: 3'- uCUAGGAGCU------------GUGGU---------GGUUGuaGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 53383 | 0.69 | 0.706522 |
Target: 5'- cGGAUCCggcaccggaacggUCGACACCACCAccggugccgcuGCcUgGUCu -3' miRNA: 3'- -UCUAGG-------------AGCUGUGGUGGU-----------UGuAgCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 49194 | 0.69 | 0.707622 |
Target: 5'- --uUCCUCGAacgccaccaCACCACCAGCcgAUCGg- -3' miRNA: 3'- ucuAGGAGCU---------GUGGUGGUUG--UAGCag -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 8796 | 0.69 | 0.707622 |
Target: 5'- -cAUCUUCGuCACCccgGCCAACA-CGUCg -3' miRNA: 3'- ucUAGGAGCuGUGG---UGGUUGUaGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 28561 | 0.69 | 0.733758 |
Target: 5'- uGAUCCgggCGAUcgccgucugaucccgACCGgCAGCGUUGUCa -3' miRNA: 3'- uCUAGGa--GCUG---------------UGGUgGUUGUAGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 50072 | 0.68 | 0.761374 |
Target: 5'- aGGAUCagcuUCGcCuCCGCCAACugGUCGUCa -3' miRNA: 3'- -UCUAGg---AGCuGuGGUGGUUG--UAGCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 54536 | 0.68 | 0.771758 |
Target: 5'- uGAUCC-CGuACGCCGCC-ACAUCuUCc -3' miRNA: 3'- uCUAGGaGC-UGUGGUGGuUGUAGcAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 10440 | 0.68 | 0.771758 |
Target: 5'- gGGA-CCaCGACACCGCCAACga-GUUg -3' miRNA: 3'- -UCUaGGaGCUGUGGUGGUUGuagCAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 37369 | 0.68 | 0.80196 |
Target: 5'- cGGUCUcgUCGcGCACCGCCGcCGUCGa- -3' miRNA: 3'- uCUAGG--AGC-UGUGGUGGUuGUAGCag -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 10136 | 0.68 | 0.80196 |
Target: 5'- cAGAaCCUUGACGCCGCCuuggGGCGgcUCGg- -3' miRNA: 3'- -UCUaGGAGCUGUGGUGG----UUGU--AGCag -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 23551 | 0.67 | 0.830493 |
Target: 5'- ---cCCUCGuCACCucgucauCCAACAUCGg- -3' miRNA: 3'- ucuaGGAGCuGUGGu------GGUUGUAGCag -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 40682 | 0.67 | 0.830493 |
Target: 5'- aGGcgUUUCGACACCAUCcGCAgguaGUCg -3' miRNA: 3'- -UCuaGGAGCUGUGGUGGuUGUag--CAG- -5' |
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19642 | 5' | -51.9 | NC_004686.1 | + | 1602 | 0.67 | 0.839582 |
Target: 5'- cAGGUCgCagUCGauguGCACCaaGCCGAUGUCGUCg -3' miRNA: 3'- -UCUAG-G--AGC----UGUGG--UGGUUGUAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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