miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19643 5' -56.2 NC_004686.1 + 14220 0.66 0.688403
Target:  5'- aGGucCGGUCACguggauUCUGAaacUCGCCCugcaccuCCAGCu -3'
miRNA:   3'- -UCu-GCCAGUG------AGACU---AGCGGG-------GGUUG- -5'
19643 5' -56.2 NC_004686.1 + 21159 0.66 0.678646
Target:  5'- uGACGGcCACcauguUCUGggCuCCCCCAAg -3'
miRNA:   3'- uCUGCCaGUG-----AGACuaGcGGGGGUUg -5'
19643 5' -56.2 NC_004686.1 + 11066 0.66 0.678646
Target:  5'- aAGACaa-CACcCUGAUCauggcuGCCCCCGGCg -3'
miRNA:   3'- -UCUGccaGUGaGACUAG------CGGGGGUUG- -5'
19643 5' -56.2 NC_004686.1 + 18562 0.67 0.613059
Target:  5'- cAGGCGGUUACUCguccAUCGgCUCCguGCu -3'
miRNA:   3'- -UCUGCCAGUGAGac--UAGC-GGGGguUG- -5'
19643 5' -56.2 NC_004686.1 + 20273 0.67 0.580354
Target:  5'- cAGACGGUCACUCauuUCGCaUCCuuCg -3'
miRNA:   3'- -UCUGCCAGUGAGacuAGCGgGGGuuG- -5'
19643 5' -56.2 NC_004686.1 + 37957 0.68 0.558749
Target:  5'- gAGAUGGUCcaagaaAUUCUGaAUCGCCUcagcaauauugCCAGCa -3'
miRNA:   3'- -UCUGCCAG------UGAGAC-UAGCGGG-----------GGUUG- -5'
19643 5' -56.2 NC_004686.1 + 12304 0.68 0.537377
Target:  5'- uAGAgGGUCAC-CUGGUCGUCCgUg-- -3'
miRNA:   3'- -UCUgCCAGUGaGACUAGCGGGgGuug -5'
19643 5' -56.2 NC_004686.1 + 9342 0.69 0.455263
Target:  5'- cGGGCGGUgGCUCgggcgGAagcgggacuuccUCGUCCCCuGCu -3'
miRNA:   3'- -UCUGCCAgUGAGa----CU------------AGCGGGGGuUG- -5'
19643 5' -56.2 NC_004686.1 + 39908 0.7 0.435792
Target:  5'- cGACcuGUCAUUCUGcUCGCCCCUg-- -3'
miRNA:   3'- uCUGc-CAGUGAGACuAGCGGGGGuug -5'
19643 5' -56.2 NC_004686.1 + 43620 0.74 0.263801
Target:  5'- uAGGCGGUCGCaCUGGUCaCCCUCAu- -3'
miRNA:   3'- -UCUGCCAGUGaGACUAGcGGGGGUug -5'
19643 5' -56.2 NC_004686.1 + 5847 1.1 0.000664
Target:  5'- gAGACGGUCACUCUGAUCGCCCCCAACg -3'
miRNA:   3'- -UCUGCCAGUGAGACUAGCGGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.