miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19644 5' -53 NC_004686.1 + 22509 0.66 0.844993
Target:  5'- uCGUACGcccACGCCG--GCG-GGAGCACc -3'
miRNA:   3'- -GCGUGC---UGCGGUauUGCgCUUCGUGu -5'
19644 5' -53 NC_004686.1 + 6851 0.66 0.844993
Target:  5'- uGCAgCGAggaugucuuCGCCA-AGCGCGuuGAGCGCGu -3'
miRNA:   3'- gCGU-GCU---------GCGGUaUUGCGC--UUCGUGU- -5'
19644 5' -53 NC_004686.1 + 906 0.66 0.836107
Target:  5'- uGCGCGGCagGCCGgcaaAACGUGggGUGuCAu -3'
miRNA:   3'- gCGUGCUG--CGGUa---UUGCGCuuCGU-GU- -5'
19644 5' -53 NC_004686.1 + 56035 0.66 0.827
Target:  5'- gCGCACGAgCGUCAUAAUcaaUGAAGC-CAc -3'
miRNA:   3'- -GCGUGCU-GCGGUAUUGc--GCUUCGuGU- -5'
19644 5' -53 NC_004686.1 + 43895 0.66 0.817682
Target:  5'- aCGCugucacaucCGugGCagccAGCGCGGAGCACc -3'
miRNA:   3'- -GCGu--------GCugCGgua-UUGCGCUUCGUGu -5'
19644 5' -53 NC_004686.1 + 29706 0.66 0.816739
Target:  5'- aGCACcggcccacuccuuGugGCCgAUGACGCGGguGGCAg- -3'
miRNA:   3'- gCGUG-------------CugCGG-UAUUGCGCU--UCGUgu -5'
19644 5' -53 NC_004686.1 + 21810 0.67 0.798455
Target:  5'- gGCGCGACGCacu--UGCGGGuGCGCc -3'
miRNA:   3'- gCGUGCUGCGguauuGCGCUU-CGUGu -5'
19644 5' -53 NC_004686.1 + 14501 0.67 0.798455
Target:  5'- uGCcagGCGAUccggaGCCGUGGCGCGgcGC-CAa -3'
miRNA:   3'- gCG---UGCUG-----CGGUAUUGCGCuuCGuGU- -5'
19644 5' -53 NC_004686.1 + 26450 0.67 0.788567
Target:  5'- cCGCACGugGUUGgguGCGCGGA-UACAu -3'
miRNA:   3'- -GCGUGCugCGGUau-UGCGCUUcGUGU- -5'
19644 5' -53 NC_004686.1 + 54192 0.67 0.788567
Target:  5'- aGUACGAuccUGCCG--GCGCGAcccccGCACAg -3'
miRNA:   3'- gCGUGCU---GCGGUauUGCGCUu----CGUGU- -5'
19644 5' -53 NC_004686.1 + 36802 0.67 0.785567
Target:  5'- aGUACG-CGCCGUgggaGACGUGGaucgcccaucgguuGGCACGu -3'
miRNA:   3'- gCGUGCuGCGGUA----UUGCGCU--------------UCGUGU- -5'
19644 5' -53 NC_004686.1 + 40091 0.67 0.7683
Target:  5'- -cCACGuuGCCGUAG-GCGgcGCACAg -3'
miRNA:   3'- gcGUGCugCGGUAUUgCGCuuCGUGU- -5'
19644 5' -53 NC_004686.1 + 40513 0.68 0.750616
Target:  5'- aCGCACuaggucgcggagggaGGCGUCGUGAUGUGuguauguGGGCACAa -3'
miRNA:   3'- -GCGUG---------------CUGCGGUAUUGCGC-------UUCGUGU- -5'
19644 5' -53 NC_004686.1 + 7114 0.68 0.747456
Target:  5'- uGCACGGCgGCCAcaagGACGCuGgcGUACc -3'
miRNA:   3'- gCGUGCUG-CGGUa---UUGCG-CuuCGUGu -5'
19644 5' -53 NC_004686.1 + 2885 0.68 0.747456
Target:  5'- uGCAgGACGCCGggguGCGUGAacuGGCcCGc -3'
miRNA:   3'- gCGUgCUGCGGUau--UGCGCU---UCGuGU- -5'
19644 5' -53 NC_004686.1 + 4229 0.68 0.726129
Target:  5'- gCGgAUGAUGUCGacGGCGuCGAGGCACAu -3'
miRNA:   3'- -GCgUGCUGCGGUa-UUGC-GCUUCGUGU- -5'
19644 5' -53 NC_004686.1 + 50455 0.69 0.693447
Target:  5'- uGC-CGAUGCCGUAcacaaccucaGCGCGGAuCGCGa -3'
miRNA:   3'- gCGuGCUGCGGUAU----------UGCGCUUcGUGU- -5'
19644 5' -53 NC_004686.1 + 24413 0.69 0.682415
Target:  5'- cCG-ACGACGgCAUGAagacCGUGAAGCGCu -3'
miRNA:   3'- -GCgUGCUGCgGUAUU----GCGCUUCGUGu -5'
19644 5' -53 NC_004686.1 + 6806 0.69 0.660214
Target:  5'- aCGCAUGAagaGCUugcugAAUGCGAAGgCGCAa -3'
miRNA:   3'- -GCGUGCUg--CGGua---UUGCGCUUC-GUGU- -5'
19644 5' -53 NC_004686.1 + 48986 0.7 0.637906
Target:  5'- aGgGCGACGUUGUAgagcGCGCGAaagcAGCACu -3'
miRNA:   3'- gCgUGCUGCGGUAU----UGCGCU----UCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.