miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19645 3' -47.9 NC_004686.1 + 32357 0.66 0.984789
Target:  5'- -gUGUCCcguCCGAAUCgAUCGUCAg- -3'
miRNA:   3'- ugGCAGGauuGGCUUAG-UAGUAGUag -5'
19645 3' -47.9 NC_004686.1 + 53607 0.66 0.982678
Target:  5'- -gCGUCCuUGACaUGAAUCAacgcuuccggcUCGUCGUCc -3'
miRNA:   3'- ugGCAGG-AUUG-GCUUAGU-----------AGUAGUAG- -5'
19645 3' -47.9 NC_004686.1 + 29287 0.66 0.980353
Target:  5'- cGCCGUCaacGCCGAggugaacagGUCAcUGUCGUCg -3'
miRNA:   3'- -UGGCAGgauUGGCU---------UAGUaGUAGUAG- -5'
19645 3' -47.9 NC_004686.1 + 38186 0.67 0.975017
Target:  5'- aACCGggugUUCUGcgacGCCGAcgCAUCAUCGa- -3'
miRNA:   3'- -UGGC----AGGAU----UGGCUuaGUAGUAGUag -5'
19645 3' -47.9 NC_004686.1 + 41502 0.67 0.968695
Target:  5'- cGCCGUCgUAuCCGGAcaaGUCAUCGg- -3'
miRNA:   3'- -UGGCAGgAUuGGCUUag-UAGUAGUag -5'
19645 3' -47.9 NC_004686.1 + 2818 0.67 0.968695
Target:  5'- gACCGuUCCgguGCCGGAUCcggugCGUCAg- -3'
miRNA:   3'- -UGGC-AGGau-UGGCUUAGua---GUAGUag -5'
19645 3' -47.9 NC_004686.1 + 4174 0.67 0.961311
Target:  5'- aGCCGUCCacGCCGGAagAUCGUg--- -3'
miRNA:   3'- -UGGCAGGauUGGCUUagUAGUAguag -5'
19645 3' -47.9 NC_004686.1 + 41879 0.71 0.841701
Target:  5'- cGCUGUCCcaUGGCCGc-UCAUCcUCGUCg -3'
miRNA:   3'- -UGGCAGG--AUUGGCuuAGUAGuAGUAG- -5'
19645 3' -47.9 NC_004686.1 + 2314 0.72 0.822818
Target:  5'- aGuuGUCUgcGACCucAUCGUCAUCAUCa -3'
miRNA:   3'- -UggCAGGa-UUGGcuUAGUAGUAGUAG- -5'
19645 3' -47.9 NC_004686.1 + 36361 0.72 0.789758
Target:  5'- gACCGUCgaAgaacucgacgcgcuGCCGGAcuUCGUCGUCGUCc -3'
miRNA:   3'- -UGGCAGgaU--------------UGGCUU--AGUAGUAGUAG- -5'
19645 3' -47.9 NC_004686.1 + 36038 0.75 0.636613
Target:  5'- -aCG-CCUGACCGcAUCAUCAUCAa- -3'
miRNA:   3'- ugGCaGGAUUGGCuUAGUAGUAGUag -5'
19645 3' -47.9 NC_004686.1 + 7317 1.1 0.004887
Target:  5'- aACCGUCCUAACCGAAUCAUCAUCAUCu -3'
miRNA:   3'- -UGGCAGGAUUGGCUUAGUAGUAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.