miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19645 5' -56.3 NC_004686.1 + 12746 0.66 0.708103
Target:  5'- uGaGGCGAUGAgCAAGCUuucgaaGGUGCAGc -3'
miRNA:   3'- gC-CUGCUGCUgGUUUGGg-----CCACGUCa -5'
19645 5' -56.3 NC_004686.1 + 2424 0.66 0.697486
Target:  5'- aGGACGAgaACCucAACCCuGGUGgGGUc -3'
miRNA:   3'- gCCUGCUgcUGGu-UUGGG-CCACgUCA- -5'
19645 5' -56.3 NC_004686.1 + 9427 0.67 0.597172
Target:  5'- uGGGCGggucgaagaacgcaGCcGCCAAGgCUGGUGCAGa -3'
miRNA:   3'- gCCUGC--------------UGcUGGUUUgGGCCACGUCa -5'
19645 5' -56.3 NC_004686.1 + 21862 0.68 0.578888
Target:  5'- cCGGACGGCGcUCGAACuCCGGguaucgcuacgGCGGc -3'
miRNA:   3'- -GCCUGCUGCuGGUUUG-GGCCa----------CGUCa -5'
19645 5' -56.3 NC_004686.1 + 19817 0.68 0.568188
Target:  5'- uGGACGACGACgAAGUCCGGcaGCGcGUc -3'
miRNA:   3'- gCCUGCUGCUGgUUUGGGCCa-CGU-CA- -5'
19645 5' -56.3 NC_004686.1 + 4734 0.68 0.557538
Target:  5'- aGGuccUGugGGCCAGauauGCCCGGUGUcaucGGUg -3'
miRNA:   3'- gCCu--GCugCUGGUU----UGGGCCACG----UCA- -5'
19645 5' -56.3 NC_004686.1 + 22489 0.68 0.557538
Target:  5'- cCGGcgGCGAUGACCGucaCCGGUggGCAGc -3'
miRNA:   3'- -GCC--UGCUGCUGGUuugGGCCA--CGUCa -5'
19645 5' -56.3 NC_004686.1 + 2808 0.68 0.546946
Target:  5'- uGGugGuguCGACCGuuccggugccgGAUCCGGUGCGu- -3'
miRNA:   3'- gCCugCu--GCUGGU-----------UUGGGCCACGUca -5'
19645 5' -56.3 NC_004686.1 + 1053 0.68 0.540621
Target:  5'- cCGGAaauuCGGCCGAagaugcgugcccagcACCCGGUGguGg -3'
miRNA:   3'- -GCCUgcu-GCUGGUU---------------UGGGCCACguCa -5'
19645 5' -56.3 NC_004686.1 + 5561 0.68 0.536418
Target:  5'- aGGGCGugGACCugagccGCCUGGUaaucccccGCGGc -3'
miRNA:   3'- gCCUGCugCUGGuu----UGGGCCA--------CGUCa -5'
19645 5' -56.3 NC_004686.1 + 5752 0.68 0.536418
Target:  5'- gGGAacauGCGGCCGGAUCCGGUgguuucGCAGa -3'
miRNA:   3'- gCCUgc--UGCUGGUUUGGGCCA------CGUCa -5'
19645 5' -56.3 NC_004686.1 + 46207 0.69 0.474963
Target:  5'- gCGGAucUGA--GCCGGacACCCGGUGCAGa -3'
miRNA:   3'- -GCCU--GCUgcUGGUU--UGGGCCACGUCa -5'
19645 5' -56.3 NC_004686.1 + 1104 0.7 0.455258
Target:  5'- uGGAgaaCGGCaccACCAAACCCGGgGCGGa -3'
miRNA:   3'- gCCU---GCUGc--UGGUUUGGGCCaCGUCa -5'
19645 5' -56.3 NC_004686.1 + 51938 0.71 0.398952
Target:  5'- cCGGACGugGGCguAACCCGccauGUGaCGGg -3'
miRNA:   3'- -GCCUGCugCUGguUUGGGC----CAC-GUCa -5'
19645 5' -56.3 NC_004686.1 + 3994 0.72 0.339175
Target:  5'- gCGGauacauGCGGCGcACCcGGCCCGGUGCGu- -3'
miRNA:   3'- -GCC------UGCUGC-UGGuUUGGGCCACGUca -5'
19645 5' -56.3 NC_004686.1 + 7287 0.74 0.265535
Target:  5'- aGGGCGGCGGCCAGAUUCcGUGCGc- -3'
miRNA:   3'- gCCUGCUGCUGGUUUGGGcCACGUca -5'
19645 5' -56.3 NC_004686.1 + 40726 0.77 0.175251
Target:  5'- gGGACGACG-CgAAAgCCGGUGCGGc -3'
miRNA:   3'- gCCUGCUGCuGgUUUgGGCCACGUCa -5'
19645 5' -56.3 NC_004686.1 + 45564 0.77 0.170628
Target:  5'- gGGGCGcauuggGCGAgCGAACCCGGUGUGGa -3'
miRNA:   3'- gCCUGC------UGCUgGUUUGGGCCACGUCa -5'
19645 5' -56.3 NC_004686.1 + 7354 1.07 0.001217
Target:  5'- aCGGACGACGACCAAACCCGGUGCAGUc -3'
miRNA:   3'- -GCCUGCUGCUGGUUUGGGCCACGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.