miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19647 3' -46.7 NC_004686.1 + 18545 0.66 0.992524
Target:  5'- ---gCAAGGgauCGCAGGACAucaccgcguGCUACg -3'
miRNA:   3'- guuaGUUCUgauGCGUCCUGU---------UGAUG- -5'
19647 3' -46.7 NC_004686.1 + 30012 0.66 0.988285
Target:  5'- aGGUCGGGGCggcCGUugcGGAuCGACUGCg -3'
miRNA:   3'- gUUAGUUCUGau-GCGu--CCU-GUUGAUG- -5'
19647 3' -46.7 NC_004686.1 + 807 0.67 0.979989
Target:  5'- gCGGUCAGGugUGCGCcuccuccaccGGACAGgUGg -3'
miRNA:   3'- -GUUAGUUCugAUGCGu---------CCUGUUgAUg -5'
19647 3' -46.7 NC_004686.1 + 43364 0.67 0.979989
Target:  5'- ----aGAGACUACGCAcuACAGCUGu -3'
miRNA:   3'- guuagUUCUGAUGCGUccUGUUGAUg -5'
19647 3' -46.7 NC_004686.1 + 42005 0.67 0.977359
Target:  5'- ---aCGAGAaagGCGCGGGGgAACUGg -3'
miRNA:   3'- guuaGUUCUga-UGCGUCCUgUUGAUg -5'
19647 3' -46.7 NC_004686.1 + 4313 0.68 0.967951
Target:  5'- -uGUCuGAGACUGCagaAGGAaCGACUGCg -3'
miRNA:   3'- guUAG-UUCUGAUGcg-UCCU-GUUGAUG- -5'
19647 3' -46.7 NC_004686.1 + 15313 0.68 0.964275
Target:  5'- aCGA-CAGGGCUuuGCAGGACc-CUGCc -3'
miRNA:   3'- -GUUaGUUCUGAugCGUCCUGuuGAUG- -5'
19647 3' -46.7 NC_004686.1 + 43555 0.68 0.964275
Target:  5'- uCGGUgAAGACgUACuCGGGGCGGCUGg -3'
miRNA:   3'- -GUUAgUUCUG-AUGcGUCCUGUUGAUg -5'
19647 3' -46.7 NC_004686.1 + 53658 0.7 0.924062
Target:  5'- uUAAUCAGGA--ACGCcGGACcguGCUGCa -3'
miRNA:   3'- -GUUAGUUCUgaUGCGuCCUGu--UGAUG- -5'
19647 3' -46.7 NC_004686.1 + 19910 0.71 0.896424
Target:  5'- ---aCGAGAgUGCGCGccuGGGCGACUAa -3'
miRNA:   3'- guuaGUUCUgAUGCGU---CCUGUUGAUg -5'
19647 3' -46.7 NC_004686.1 + 48887 0.73 0.807044
Target:  5'- --cUCAGGGCUACGCcacgcGGACGGCg-- -3'
miRNA:   3'- guuAGUUCUGAUGCGu----CCUGUUGaug -5'
19647 3' -46.7 NC_004686.1 + 7885 1.12 0.00449
Target:  5'- aCAAUCAAGACUACGCAGGACAACUACg -3'
miRNA:   3'- -GUUAGUUCUGAUGCGUCCUGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.