miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19648 5' -50.3 NC_004686.1 + 5664 0.66 0.897327
Target:  5'- --aGGaGCCCAGgCGucuauGAGGACAUCGAAc -3'
miRNA:   3'- gagUC-CGGGUCgGU-----UUUUUGUAGCUU- -5'
19648 5' -50.3 NC_004686.1 + 31452 0.66 0.889795
Target:  5'- -gCAGGCgUAGCCGAGGAGgAggcCGAAg -3'
miRNA:   3'- gaGUCCGgGUCGGUUUUUUgUa--GCUU- -5'
19648 5' -50.3 NC_004686.1 + 26211 0.67 0.881972
Target:  5'- -gCAGGCCCAcucGCCAAcauucACAUCGc- -3'
miRNA:   3'- gaGUCCGGGU---CGGUUuuu--UGUAGCuu -5'
19648 5' -50.3 NC_004686.1 + 51225 0.67 0.865474
Target:  5'- cCUgAGGCUCGGCCAuc-GACAggCGGg -3'
miRNA:   3'- -GAgUCCGGGUCGGUuuuUUGUa-GCUu -5'
19648 5' -50.3 NC_004686.1 + 9640 0.69 0.789447
Target:  5'- --aGGGCUucacuCGGCUGAAAAACAUCGAc -3'
miRNA:   3'- gagUCCGG-----GUCGGUUUUUUGUAGCUu -5'
19648 5' -50.3 NC_004686.1 + 5604 0.69 0.746672
Target:  5'- cCUCuuuGGCCCGGUCAAu-GugAUCGGc -3'
miRNA:   3'- -GAGu--CCGGGUCGGUUuuUugUAGCUu -5'
19648 5' -50.3 NC_004686.1 + 8357 0.72 0.597723
Target:  5'- --aAGGUCCAGCCAAAAugaccGACAUCa-- -3'
miRNA:   3'- gagUCCGGGUCGGUUUU-----UUGUAGcuu -5'
19648 5' -50.3 NC_004686.1 + 47909 0.75 0.422651
Target:  5'- -cCAGGCCCAGCCAcgGAAAACcacCGGg -3'
miRNA:   3'- gaGUCCGGGUCGGU--UUUUUGua-GCUu -5'
19648 5' -50.3 NC_004686.1 + 7638 0.79 0.246437
Target:  5'- uUCAGGCCCAGCCAAucAACGccUGAAa -3'
miRNA:   3'- gAGUCCGGGUCGGUUuuUUGUa-GCUU- -5'
19648 5' -50.3 NC_004686.1 + 22110 0.8 0.214631
Target:  5'- -gCAGuGCCCAGCCGAGuGGACAUCGGGa -3'
miRNA:   3'- gaGUC-CGGGUCGGUUU-UUUGUAGCUU- -5'
19648 5' -50.3 NC_004686.1 + 8326 1.06 0.003846
Target:  5'- cCUCAGGCCCAGCCAAAAAACAUCGAAc -3'
miRNA:   3'- -GAGUCCGGGUCGGUUUUUUGUAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.