miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19650 5' -55.9 NC_004686.1 + 22751 0.66 0.737735
Target:  5'- gCCGUG---GGGCCGUCUGGGAUguaGUCg -3'
miRNA:   3'- gGGCGCcuaCCUGGUAGGCUCUG---UAG- -5'
19650 5' -55.9 NC_004686.1 + 33740 0.66 0.727344
Target:  5'- gCUGauGAUGGucucuacgauCCAUCCG-GGCAUCa -3'
miRNA:   3'- gGGCgcCUACCu---------GGUAGGCuCUGUAG- -5'
19650 5' -55.9 NC_004686.1 + 8793 0.66 0.727344
Target:  5'- cUCCGCGGAgaucgcgcaGGCCAaggCCGAGugGgaUCg -3'
miRNA:   3'- -GGGCGCCUac-------CUGGUa--GGCUCugU--AG- -5'
19650 5' -55.9 NC_004686.1 + 47420 0.66 0.71686
Target:  5'- cUCCGCGGA-GGugCAguucuccaccaCCGAGAacugcuCAUCg -3'
miRNA:   3'- -GGGCGCCUaCCugGUa----------GGCUCU------GUAG- -5'
19650 5' -55.9 NC_004686.1 + 22452 0.68 0.576968
Target:  5'- gCC-CGGAUGGAUCGUa-GAGAcCAUCa -3'
miRNA:   3'- gGGcGCCUACCUGGUAggCUCU-GUAG- -5'
19650 5' -55.9 NC_004686.1 + 47274 0.69 0.555621
Target:  5'- gCCGaugucuCGGAUGGuCCAUCCGcGGGCGa- -3'
miRNA:   3'- gGGC------GCCUACCuGGUAGGC-UCUGUag -5'
19650 5' -55.9 NC_004686.1 + 18979 0.69 0.545033
Target:  5'- gCCCGCGccgGGACCAaugucacccaCCGAGACGg- -3'
miRNA:   3'- -GGGCGCcuaCCUGGUa---------GGCUCUGUag -5'
19650 5' -55.9 NC_004686.1 + 13279 0.69 0.53451
Target:  5'- gCCUGCGG-UGGugUgcaguagcGUCUGAGGCGUa -3'
miRNA:   3'- -GGGCGCCuACCugG--------UAGGCUCUGUAg -5'
19650 5' -55.9 NC_004686.1 + 11128 0.7 0.47311
Target:  5'- gCUuuGGGUGGGCaGUCCGGGGCAUa -3'
miRNA:   3'- gGGcgCCUACCUGgUAGGCUCUGUAg -5'
19650 5' -55.9 NC_004686.1 + 13468 0.71 0.415465
Target:  5'- -gCGCGGAUGGuGCCGUgCCGcaACAUCa -3'
miRNA:   3'- ggGCGCCUACC-UGGUA-GGCucUGUAG- -5'
19650 5' -55.9 NC_004686.1 + 52230 0.71 0.397226
Target:  5'- gCCUGCGGAuccuccUGGGCUgAUCCG-GugAUCg -3'
miRNA:   3'- -GGGCGCCU------ACCUGG-UAGGCuCugUAG- -5'
19650 5' -55.9 NC_004686.1 + 8460 0.72 0.353116
Target:  5'- gCCGCGGugggacuuccucgAUGaGGCCAgugUCCGuGACAUCa -3'
miRNA:   3'- gGGCGCC-------------UAC-CUGGU---AGGCuCUGUAG- -5'
19650 5' -55.9 NC_004686.1 + 39600 0.74 0.277752
Target:  5'- gUCGUGGAacgguUGGACCA-CCGGcGACAUCg -3'
miRNA:   3'- gGGCGCCU-----ACCUGGUaGGCU-CUGUAG- -5'
19650 5' -55.9 NC_004686.1 + 8919 1.12 0.000649
Target:  5'- gCCCGCGGAUGGACCAUCCGAGACAUCg -3'
miRNA:   3'- -GGGCGCCUACCUGGUAGGCUCUGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.