miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19651 3' -59.3 NC_004686.1 + 44806 0.67 0.452264
Target:  5'- uGCGGCGGUgauguacacGGUuucuGGGacGugGCCCc -3'
miRNA:   3'- gCGCCGCCG---------CCAuu--CCCguUugCGGG- -5'
19651 3' -59.3 NC_004686.1 + 22681 0.67 0.442779
Target:  5'- -cCGGCGGCagcguucaucGGUGuaucGGGCGGACaGCCg -3'
miRNA:   3'- gcGCCGCCG----------CCAUu---CCCGUUUG-CGGg -5'
19651 3' -59.3 NC_004686.1 + 6370 0.67 0.433407
Target:  5'- uGCGGCGuGCGGUGucuGCGu-CGCUCa -3'
miRNA:   3'- gCGCCGC-CGCCAUuccCGUuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 23821 0.67 0.433407
Target:  5'- cCGCGGCGaGCGGagagccgagAAGGcGCAcgUGCUg -3'
miRNA:   3'- -GCGCCGC-CGCCa--------UUCC-CGUuuGCGGg -5'
19651 3' -59.3 NC_004686.1 + 22361 0.67 0.433407
Target:  5'- gGCGGCaGCGGUGAcGGCuccaauGGCgGCaCCg -3'
miRNA:   3'- gCGCCGcCGCCAUUcCCGu-----UUG-CG-GG- -5'
19651 3' -59.3 NC_004686.1 + 32396 0.67 0.433407
Target:  5'- cCGCGGCcgaucGCGGUGugcauacGGCGAAUGUCUg -3'
miRNA:   3'- -GCGCCGc----CGCCAUuc-----CCGUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 17736 0.68 0.424152
Target:  5'- uCGCGGUGGCGc--AGGaGUucACGCCg -3'
miRNA:   3'- -GCGCCGCCGCcauUCC-CGuuUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 21001 0.68 0.424152
Target:  5'- -uUGGgGGCGGUAcGGGUAGuuuCGCUg -3'
miRNA:   3'- gcGCCgCCGCCAUuCCCGUUu--GCGGg -5'
19651 3' -59.3 NC_004686.1 + 2091 0.68 0.424152
Target:  5'- uGuCGGgGGCGGUGuauGcGGCGAugacCGCUCg -3'
miRNA:   3'- gC-GCCgCCGCCAUu--C-CCGUUu---GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 18887 0.68 0.415016
Target:  5'- aGuCGGCGGUGGUAcguucGGCGAAggUGCCg -3'
miRNA:   3'- gC-GCCGCCGCCAUuc---CCGUUU--GCGGg -5'
19651 3' -59.3 NC_004686.1 + 18132 0.68 0.406002
Target:  5'- uGCGGCGGCaGGaacGGGCGGAa--CCa -3'
miRNA:   3'- gCGCCGCCG-CCauuCCCGUUUgcgGG- -5'
19651 3' -59.3 NC_004686.1 + 18233 0.68 0.397112
Target:  5'- gGgGGCGuuGCgGGUGAcGGGCAggUcgGCCCa -3'
miRNA:   3'- gCgCCGC--CG-CCAUU-CCCGUuuG--CGGG- -5'
19651 3' -59.3 NC_004686.1 + 22187 0.68 0.388348
Target:  5'- gGCGGCaacGGCGGcaacGGcGGCAGcaGCCCa -3'
miRNA:   3'- gCGCCG---CCGCCau--UC-CCGUUugCGGG- -5'
19651 3' -59.3 NC_004686.1 + 19401 0.68 0.388348
Target:  5'- aGUGGUGGUGGUAucgcgccGGGUGGugGCg- -3'
miRNA:   3'- gCGCCGCCGCCAUu------CCCGUUugCGgg -5'
19651 3' -59.3 NC_004686.1 + 16869 0.68 0.387478
Target:  5'- uGCGuuGGCGGccggcaacacuauUGAGGGCugguauGAcCGCCCa -3'
miRNA:   3'- gCGCcgCCGCC-------------AUUCCCGu-----UU-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 4663 0.69 0.36283
Target:  5'- gGUGGCGGCGuUGAGcGCGucccACGCCg -3'
miRNA:   3'- gCGCCGCCGCcAUUCcCGUu---UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 19077 0.69 0.36283
Target:  5'- -uUGGCGcaguuCGGUGAGGGCGGcugGCCCg -3'
miRNA:   3'- gcGCCGCc----GCCAUUCCCGUUug-CGGG- -5'
19651 3' -59.3 NC_004686.1 + 1667 0.69 0.354587
Target:  5'- uGUGGCGGC-GUAcGGGaucAACGCCa -3'
miRNA:   3'- gCGCCGCCGcCAUuCCCgu-UUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 42778 0.69 0.35214
Target:  5'- gGCGGC-GCGGgcucagGAGuuggaagccaggcaGGCGGACGCCUc -3'
miRNA:   3'- gCGCCGcCGCCa-----UUC--------------CCGUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 49602 0.69 0.346476
Target:  5'- -uCGGauGCGGaAGGGGCugcgacuGGCGCCCc -3'
miRNA:   3'- gcGCCgcCGCCaUUCCCGu------UUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.