miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19651 5' -57.1 NC_004686.1 + 27609 0.66 0.639351
Target:  5'- cGAAGU----CUCUGACAAcGCUGCCGg -3'
miRNA:   3'- uCUUCGcaggGAGACUGUU-CGGCGGC- -5'
19651 5' -57.1 NC_004686.1 + 48927 0.66 0.628459
Target:  5'- cGGAuccccGGCuGUCCCUCuuUGACAAuGCggaUGCCGg -3'
miRNA:   3'- -UCU-----UCG-CAGGGAG--ACUGUU-CG---GCGGC- -5'
19651 5' -57.1 NC_004686.1 + 16570 0.67 0.57423
Target:  5'- cGGAGCaUCCgacuuCUUUGGCGAuGUCGCCGg -3'
miRNA:   3'- uCUUCGcAGG-----GAGACUGUU-CGGCGGC- -5'
19651 5' -57.1 NC_004686.1 + 53602 0.67 0.56778
Target:  5'- cGGAGGCGUCCU--UGACAugaaucaacgcuuccGGCuCGUCGu -3'
miRNA:   3'- -UCUUCGCAGGGagACUGU---------------UCG-GCGGC- -5'
19651 5' -57.1 NC_004686.1 + 56102 0.67 0.531627
Target:  5'- cGGAGCGUCCCcgucacgCcGGCGaaccucAGCCcGCCGa -3'
miRNA:   3'- uCUUCGCAGGGa------GaCUGU------UCGG-CGGC- -5'
19651 5' -57.1 NC_004686.1 + 43385 0.67 0.521147
Target:  5'- gAGAuaucGCGgaUCCCcggCUGACucauGGCCGCCc -3'
miRNA:   3'- -UCUu---CGC--AGGGa--GACUGu---UCGGCGGc -5'
19651 5' -57.1 NC_004686.1 + 2837 0.68 0.500437
Target:  5'- cGAAGCGUCCgUUCgGGC-AGUCGCgGa -3'
miRNA:   3'- uCUUCGCAGG-GAGaCUGuUCGGCGgC- -5'
19651 5' -57.1 NC_004686.1 + 33604 0.68 0.480099
Target:  5'- uGGggGUgaccaccgGUCCCgacaagGGCuGGCCGCCGg -3'
miRNA:   3'- -UCuuCG--------CAGGGaga---CUGuUCGGCGGC- -5'
19651 5' -57.1 NC_004686.1 + 16453 0.72 0.281837
Target:  5'- aGGAGGCG-CCgUCgucgagcaGGCGGGCCGCCu -3'
miRNA:   3'- -UCUUCGCaGGgAGa-------CUGUUCGGCGGc -5'
19651 5' -57.1 NC_004686.1 + 16087 0.76 0.1719
Target:  5'- --cGGCGUUCacgCUCgGACAGGCCGCCGa -3'
miRNA:   3'- ucuUCGCAGG---GAGaCUGUUCGGCGGC- -5'
19651 5' -57.1 NC_004686.1 + 9143 1.09 0.000622
Target:  5'- cAGAAGCGUCCCUCUGACAAGCCGCCGg -3'
miRNA:   3'- -UCUUCGCAGGGAGACUGUUCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.