miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19652 5' -50.6 NC_004686.1 + 33540 0.66 0.945183
Target:  5'- -----gGUUCGAUGaUGCGGGCcuGCCGa -3'
miRNA:   3'- gauaaaCAGGUUACaGCGCCUG--CGGC- -5'
19652 5' -50.6 NC_004686.1 + 16729 0.66 0.945183
Target:  5'- -----aGUCCAAcccugGcCGCGGaaauGCGCCGa -3'
miRNA:   3'- gauaaaCAGGUUa----CaGCGCC----UGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 1216 0.66 0.94015
Target:  5'- -gGUUUGUgCGGUGgCGCGGuuguaggcgGCGCUGc -3'
miRNA:   3'- gaUAAACAgGUUACaGCGCC---------UGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 43851 0.66 0.94015
Target:  5'- -------aCCGGUcGUCGUGGcCGCCGg -3'
miRNA:   3'- gauaaacaGGUUA-CAGCGCCuGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 16608 0.66 0.94015
Target:  5'- cCUGUUcGaUCCGuUGUCGUGgGugGUCGg -3'
miRNA:   3'- -GAUAAaC-AGGUuACAGCGC-CugCGGC- -5'
19652 5' -50.6 NC_004686.1 + 29059 0.66 0.929218
Target:  5'- uUAUgcGUCgGGUGUgGUGGcguauGCGCCGa -3'
miRNA:   3'- gAUAaaCAGgUUACAgCGCC-----UGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 12042 0.66 0.916487
Target:  5'- ----gUGUCCGG-GUUGUacaacauGGGCGCCGa -3'
miRNA:   3'- gauaaACAGGUUaCAGCG-------CCUGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 51018 0.67 0.910638
Target:  5'- -----gGUCCGccaugGUCuGCaGGACGCCGa -3'
miRNA:   3'- gauaaaCAGGUua---CAG-CG-CCUGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 4218 0.67 0.910638
Target:  5'- ----gUGU-CGAUGUCGCGGAugaUGUCGa -3'
miRNA:   3'- gauaaACAgGUUACAGCGCCU---GCGGC- -5'
19652 5' -50.6 NC_004686.1 + 30087 0.67 0.903866
Target:  5'- ----aUGUCCuugaaGUCGCcGugGCCGg -3'
miRNA:   3'- gauaaACAGGuua--CAGCGcCugCGGC- -5'
19652 5' -50.6 NC_004686.1 + 47225 0.68 0.857422
Target:  5'- ----gUGggagCCAGgcgaucagGUCGCGGACGUCa -3'
miRNA:   3'- gauaaACa---GGUUa-------CAGCGCCUGCGGc -5'
19652 5' -50.6 NC_004686.1 + 46395 0.71 0.707357
Target:  5'- ----cUGUCCAGUGg---GGACGCCGg -3'
miRNA:   3'- gauaaACAGGUUACagcgCCUGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 24259 0.71 0.685129
Target:  5'- -------cCCGccGUCGCGGACGCCc -3'
miRNA:   3'- gauaaacaGGUuaCAGCGCCUGCGGc -5'
19652 5' -50.6 NC_004686.1 + 132 0.74 0.517609
Target:  5'- -----gGUCCAccgGUCGCGGGUGCCGa -3'
miRNA:   3'- gauaaaCAGGUua-CAGCGCCUGCGGC- -5'
19652 5' -50.6 NC_004686.1 + 9838 1.09 0.003171
Target:  5'- aCUAUUUGUCCAAUGUCGCGGACGCCGc -3'
miRNA:   3'- -GAUAAACAGGUUACAGCGCCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.