Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19653 | 3' | -57.6 | NC_004686.1 | + | 185 | 0.67 | 0.541794 |
Target: 5'- uGCcGGGCGGgugggcgacggugcCGUUgucgCUGUGG-UCGACCa -3' miRNA: 3'- -CGuCCCGCC--------------GCAA----GGCACCuAGCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 1882 | 0.69 | 0.4643 |
Target: 5'- uGCAGGGUGGaCGUcaucugguugCCGaGGcggCGACCa -3' miRNA: 3'- -CGUCCCGCC-GCAa---------GGCaCCua-GCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 2751 | 0.66 | 0.650857 |
Target: 5'- uGguGGGUGGUGUggucacagCgGUgaGGGUCGcCCa -3' miRNA: 3'- -CguCCCGCCGCAa-------GgCA--CCUAGCuGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 3442 | 0.75 | 0.213053 |
Target: 5'- aGCAGuuGGCGGCGgugCCGUGGcuugcggaGACCg -3' miRNA: 3'- -CGUC--CCGCCGCaa-GGCACCuag-----CUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 5528 | 0.66 | 0.629517 |
Target: 5'- aCGcGGCGGUGUcggacaccgUCCGUGG--CGGCCc -3' miRNA: 3'- cGUcCCGCCGCA---------AGGCACCuaGCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 7286 | 0.7 | 0.417188 |
Target: 5'- -aAGGGCGGCGgccagaUUCCGUGcGccGUCcGCCg -3' miRNA: 3'- cgUCCCGCCGC------AAGGCAC-C--UAGcUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 8283 | 0.68 | 0.514041 |
Target: 5'- uGCccGGUGGUuUUCCGUGGcUgGGCCu -3' miRNA: 3'- -CGucCCGCCGcAAGGCACCuAgCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 11216 | 1.14 | 0.000321 |
Target: 5'- aGCAGGGCGGCGUUCCGUGGAUCGACCa -3' miRNA: 3'- -CGUCCCGCCGCAAGGCACCUAGCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 12596 | 0.67 | 0.586932 |
Target: 5'- cCAGGGUGGCGUgcuggaaCCG-GGAauggUUGGCa -3' miRNA: 3'- cGUCCCGCCGCAa------GGCaCCU----AGCUGg -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 18350 | 0.67 | 0.555336 |
Target: 5'- cGCAGGG-GGCGUUUgCGUGGcugcUGGCg -3' miRNA: 3'- -CGUCCCgCCGCAAG-GCACCua--GCUGg -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 21020 | 0.68 | 0.518118 |
Target: 5'- gGCAGcgcaauauccguaucGGCGGCGUacccaCCGgucuuacGGAUCGACg -3' miRNA: 3'- -CGUC---------------CCGCCGCAa----GGCa------CCUAGCUGg -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 21846 | 0.66 | 0.618846 |
Target: 5'- gGCGcGGGCGGCGgcUCCGgacGGcgcUCGAacuCCg -3' miRNA: 3'- -CGU-CCCGCCGCa-AGGCa--CCu--AGCU---GG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 21892 | 0.66 | 0.629517 |
Target: 5'- aCGGcGGCGGCGguggCgGUGGcggugccuauAUCGACg -3' miRNA: 3'- cGUC-CCGCCGCaa--GgCACC----------UAGCUGg -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 25350 | 0.67 | 0.555336 |
Target: 5'- cCGGGaGCGGCGaugaugCCGUGGGUgugGACg -3' miRNA: 3'- cGUCC-CGCCGCaa----GGCACCUAg--CUGg -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 29133 | 0.69 | 0.445113 |
Target: 5'- gGCGGGccgcgcuuGCGGaUGUcugaUCCGUGGAUUGAUg -3' miRNA: 3'- -CGUCC--------CGCC-GCA----AGGCACCUAGCUGg -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 30015 | 0.72 | 0.28779 |
Target: 5'- uCGGGGCGGcCGUUgC--GGAUCGACUg -3' miRNA: 3'- cGUCCCGCC-GCAAgGcaCCUAGCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 30624 | 0.66 | 0.618846 |
Target: 5'- cGCAGGcCGGCGgacUCGUGGc-CGAUCu -3' miRNA: 3'- -CGUCCcGCCGCaa-GGCACCuaGCUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 30967 | 0.71 | 0.356385 |
Target: 5'- aGCAGcGGCGGCGaUCaGUGGAagcagGGCCu -3' miRNA: 3'- -CGUC-CCGCCGCaAGgCACCUag---CUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 31685 | 0.72 | 0.302086 |
Target: 5'- gGCGGGGCcGCGggauugaaCGUGGAUCuucauGACCg -3' miRNA: 3'- -CGUCCCGcCGCaag-----GCACCUAG-----CUGG- -5' |
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19653 | 3' | -57.6 | NC_004686.1 | + | 32512 | 0.67 | 0.56582 |
Target: 5'- gGUGGGGCGGaucCGUUCCuuauggacGUGGggCaGCCa -3' miRNA: 3'- -CGUCCCGCC---GCAAGG--------CACCuaGcUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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