miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19653 5' -55.1 NC_004686.1 + 18040 0.66 0.764896
Target:  5'- cAGGAUUGg-GuGGAugGuUUGCCUGACg -3'
miRNA:   3'- -UCCUAGCagCuCCUugU-AGCGGGCUG- -5'
19653 5' -55.1 NC_004686.1 + 56148 0.66 0.754703
Target:  5'- cGGAUCGUCGuGGAAg--CGaaCGGCa -3'
miRNA:   3'- uCCUAGCAGCuCCUUguaGCggGCUG- -5'
19653 5' -55.1 NC_004686.1 + 50406 0.66 0.733957
Target:  5'- cAGGAUuCGUCGGcgucgcGGAccacagcgaacGCAUCGgUCGACa -3'
miRNA:   3'- -UCCUA-GCAGCU------CCU-----------UGUAGCgGGCUG- -5'
19653 5' -55.1 NC_004686.1 + 46328 0.67 0.702108
Target:  5'- --uAUCGUCGAGcgacguuuGAGCgAUCGCCgCGGCg -3'
miRNA:   3'- uccUAGCAGCUC--------CUUG-UAGCGG-GCUG- -5'
19653 5' -55.1 NC_004686.1 + 49171 0.67 0.680519
Target:  5'- gGGGA-CGcCGAGuu-CAUCGCCCaGGCg -3'
miRNA:   3'- -UCCUaGCaGCUCcuuGUAGCGGG-CUG- -5'
19653 5' -55.1 NC_004686.1 + 29451 0.68 0.636879
Target:  5'- cGGAUCGUCGuGGAucAUGUgGCUgGAUu -3'
miRNA:   3'- uCCUAGCAGCuCCU--UGUAgCGGgCUG- -5'
19653 5' -55.1 NC_004686.1 + 42413 0.69 0.582296
Target:  5'- uGGAagGUUGAGGGGCAgaagaauuuggCGUUCGACg -3'
miRNA:   3'- uCCUagCAGCUCCUUGUa----------GCGGGCUG- -5'
19653 5' -55.1 NC_004686.1 + 17401 0.69 0.582296
Target:  5'- cGGAuUCGUUGAGGAACcaaauGUCGCCg--- -3'
miRNA:   3'- uCCU-AGCAGCUCCUUG-----UAGCGGgcug -5'
19653 5' -55.1 NC_004686.1 + 72 0.7 0.51821
Target:  5'- cGGGAUCGUCGGcGGGCugagguUCG-CCGGCg -3'
miRNA:   3'- -UCCUAGCAGCUcCUUGu-----AGCgGGCUG- -5'
19653 5' -55.1 NC_004686.1 + 21380 0.71 0.457111
Target:  5'- uGGGUCGUCGgaguuGGGGGCGgugucuggUGCUCGGCg -3'
miRNA:   3'- uCCUAGCAGC-----UCCUUGUa-------GCGGGCUG- -5'
19653 5' -55.1 NC_004686.1 + 11263 1.09 0.001253
Target:  5'- aAGGAUCGUCGAGGAACAUCGCCCGACc -3'
miRNA:   3'- -UCCUAGCAGCUCCUUGUAGCGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.