miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19656 3' -56.7 NC_004686.1 + 50930 0.66 0.655431
Target:  5'- gGCGAacccgacagagcCGcACCGGUGAGCGGGuugaugccgUGGAuGCc -3'
miRNA:   3'- -UGCU------------GC-UGGCCACUCGUCU---------ACCU-CGu -5'
19656 3' -56.7 NC_004686.1 + 42715 0.66 0.622702
Target:  5'- uGCGAaGGCCGGUGAGUuguuGAauguUGGuGCc -3'
miRNA:   3'- -UGCUgCUGGCCACUCGu---CU----ACCuCGu -5'
19656 3' -56.7 NC_004686.1 + 5759 0.67 0.590045
Target:  5'- uGCGGCcgGAuCCGGUGGuuucGCAGAUGGcuuuGCGc -3'
miRNA:   3'- -UGCUG--CU-GGCCACU----CGUCUACCu---CGU- -5'
19656 3' -56.7 NC_004686.1 + 9070 0.67 0.579217
Target:  5'- gGCGAUGAuuCUGGUGAcguuGCAG--GGAGCGa -3'
miRNA:   3'- -UGCUGCU--GGCCACU----CGUCuaCCUCGU- -5'
19656 3' -56.7 NC_004686.1 + 19250 0.67 0.557698
Target:  5'- aACGuCGACCGGUGuGCAcGAguugcggugUGaGGGCGg -3'
miRNA:   3'- -UGCuGCUGGCCACuCGU-CU---------AC-CUCGU- -5'
19656 3' -56.7 NC_004686.1 + 24522 0.68 0.536414
Target:  5'- gGCGGCGACggugcugCGGUcgaaugguguggauGAGCAGAcccguauggagauuuUGGGGCAu -3'
miRNA:   3'- -UGCUGCUG-------GCCA--------------CUCGUCU---------------ACCUCGU- -5'
19656 3' -56.7 NC_004686.1 + 23228 0.68 0.515419
Target:  5'- -aGGCugugaGCUGGUgGGGCGGGUGGGGCu -3'
miRNA:   3'- ugCUGc----UGGCCA-CUCGUCUACCUCGu -5'
19656 3' -56.7 NC_004686.1 + 38106 0.7 0.416359
Target:  5'- cCGACGAuCUGG-GAGCAGAUGaacGGCGa -3'
miRNA:   3'- uGCUGCU-GGCCaCUCGUCUACc--UCGU- -5'
19656 3' -56.7 NC_004686.1 + 48955 0.7 0.407098
Target:  5'- uGCGGauGCCGGUGAGCAcacccGGGGCGu -3'
miRNA:   3'- -UGCUgcUGGCCACUCGUcua--CCUCGU- -5'
19656 3' -56.7 NC_004686.1 + 162 0.7 0.385409
Target:  5'- gGCGACGcgGCCGGguuggcgggugccGGGCGGGUGG-GCGa -3'
miRNA:   3'- -UGCUGC--UGGCCa------------CUCGUCUACCuCGU- -5'
19656 3' -56.7 NC_004686.1 + 46413 0.72 0.29913
Target:  5'- gGCGGCGACCGcaGUGgcGGCAGuguUGGcAGCAg -3'
miRNA:   3'- -UGCUGCUGGC--CAC--UCGUCu--ACC-UCGU- -5'
19656 3' -56.7 NC_004686.1 + 22491 0.74 0.214692
Target:  5'- gGCGGCGAugaccgucaCCGGUGGGCAGccugaaGUGGaAGCGa -3'
miRNA:   3'- -UGCUGCU---------GGCCACUCGUC------UACC-UCGU- -5'
19656 3' -56.7 NC_004686.1 + 12359 1.08 0.000835
Target:  5'- cACGACGACCGGUGAGCAGAUGGAGCAg -3'
miRNA:   3'- -UGCUGCUGGCCACUCGUCUACCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.