miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19656 5' -58.4 NC_004686.1 + 27849 0.66 0.548859
Target:  5'- gGGUGuCGCAugaCCGaauGCGGUUGGUg- -3'
miRNA:   3'- -CCAC-GCGUug-GGUgu-CGCCGACCAgu -5'
19656 5' -58.4 NC_004686.1 + 34400 0.66 0.538326
Target:  5'- aGUGCGUcgcGCCgACAGgGGUUGGg-- -3'
miRNA:   3'- cCACGCGu--UGGgUGUCgCCGACCagu -5'
19656 5' -58.4 NC_004686.1 + 28676 0.66 0.538326
Target:  5'- -cUGCGCAcUCCACAGCGGUgaaugaUGcGUUg -3'
miRNA:   3'- ccACGCGUuGGGUGUCGCCG------AC-CAGu -5'
19656 5' -58.4 NC_004686.1 + 24510 0.66 0.527864
Target:  5'- --gGCGCGGCaUACGGCGGCgacggugcugcGGUCGa -3'
miRNA:   3'- ccaCGCGUUGgGUGUCGCCGa----------CCAGU- -5'
19656 5' -58.4 NC_004686.1 + 46592 0.66 0.527864
Target:  5'- aGGUaGCgaGCAGCCCgACAGCGGCa----- -3'
miRNA:   3'- -CCA-CG--CGUUGGG-UGUCGCCGaccagu -5'
19656 5' -58.4 NC_004686.1 + 54071 0.66 0.527864
Target:  5'- -uUGCGCGAcuguuCCCAgacgGGCGGCgagcGGUCAu -3'
miRNA:   3'- ccACGCGUU-----GGGUg---UCGCCGa---CCAGU- -5'
19656 5' -58.4 NC_004686.1 + 11928 0.66 0.527864
Target:  5'- cGGUGgGCAACCCGucCAG-GGCagugaUGGUg- -3'
miRNA:   3'- -CCACgCGUUGGGU--GUCgCCG-----ACCAgu -5'
19656 5' -58.4 NC_004686.1 + 54271 0.66 0.527864
Target:  5'- uGGaUGCGCAACCCaaacaggacuACAGCc-UUGGUCGc -3'
miRNA:   3'- -CC-ACGCGUUGGG----------UGUCGccGACCAGU- -5'
19656 5' -58.4 NC_004686.1 + 36895 0.66 0.527864
Target:  5'- aGGUgaugGCGUcgGAUCCGgAGUGGCUGG-CGa -3'
miRNA:   3'- -CCA----CGCG--UUGGGUgUCGCCGACCaGU- -5'
19656 5' -58.4 NC_004686.1 + 39553 0.66 0.517478
Target:  5'- cGGgGCGCGAaacuCCCGgAGUGGgUGGUgGa -3'
miRNA:   3'- -CCaCGCGUU----GGGUgUCGCCgACCAgU- -5'
19656 5' -58.4 NC_004686.1 + 20445 0.67 0.486839
Target:  5'- --gGCGaaaauGCCCGCcccguacGCGGUUGGUCAu -3'
miRNA:   3'- ccaCGCgu---UGGGUGu------CGCCGACCAGU- -5'
19656 5' -58.4 NC_004686.1 + 17056 0.67 0.483821
Target:  5'- aGGUcuGCGCAuacguGCCCaugaacucgccaccGCAGUGGCUgcaGGUCu -3'
miRNA:   3'- -CCA--CGCGU-----UGGG--------------UGUCGCCGA---CCAGu -5'
19656 5' -58.4 NC_004686.1 + 17455 0.67 0.466897
Target:  5'- cGGUGUGCAGCCgCGCGagguGUGGgagacGGUCAc -3'
miRNA:   3'- -CCACGCGUUGG-GUGU----CGCCga---CCAGU- -5'
19656 5' -58.4 NC_004686.1 + 52659 0.68 0.428334
Target:  5'- cGUGcCGCGGCCCugAacGCGGCguuuGUCGg -3'
miRNA:   3'- cCAC-GCGUUGGGugU--CGCCGac--CAGU- -5'
19656 5' -58.4 NC_004686.1 + 31017 0.69 0.382887
Target:  5'- cGGuUGCgGCAGCCUcgACGGCGGUUuugaugauggGGUCGa -3'
miRNA:   3'- -CC-ACG-CGUUGGG--UGUCGCCGA----------CCAGU- -5'
19656 5' -58.4 NC_004686.1 + 2751 0.69 0.348912
Target:  5'- uGGUGgGUggUguggUCACAGCGGUgagGGUCGc -3'
miRNA:   3'- -CCACgCGuuG----GGUGUCGCCGa--CCAGU- -5'
19656 5' -58.4 NC_004686.1 + 24333 0.7 0.324876
Target:  5'- -aUGCGCcACCgGCAGCGGC-GGaCAa -3'
miRNA:   3'- ccACGCGuUGGgUGUCGCCGaCCaGU- -5'
19656 5' -58.4 NC_004686.1 + 49048 0.7 0.309548
Target:  5'- cGUGCGUaugguGACaCCGCAGCGacGCUGGUa- -3'
miRNA:   3'- cCACGCG-----UUG-GGUGUCGC--CGACCAgu -5'
19656 5' -58.4 NC_004686.1 + 45751 0.7 0.302093
Target:  5'- aGUGCGCAACUCguuGGCGGUgucgUGGUCc -3'
miRNA:   3'- cCACGCGUUGGGug-UCGCCG----ACCAGu -5'
19656 5' -58.4 NC_004686.1 + 15550 0.72 0.235089
Target:  5'- cGGUGCuCGGCCCACAGaGGaaccGGUCAu -3'
miRNA:   3'- -CCACGcGUUGGGUGUCgCCga--CCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.