miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19657 5' -53.9 NC_004686.1 + 5558 0.66 0.842076
Target:  5'- aUCAGgGCGuGGACCUgagccGCCUgguaAUCCCc -3'
miRNA:   3'- -GGUCaUGCuCCUGGGac---UGGA----UAGGG- -5'
19657 5' -53.9 NC_004686.1 + 41326 0.66 0.824319
Target:  5'- uUCGGUG-GAGGaaGCCCgaGACCUcgCCg -3'
miRNA:   3'- -GGUCAUgCUCC--UGGGa-CUGGAuaGGg -5'
19657 5' -53.9 NC_004686.1 + 14223 0.66 0.796211
Target:  5'- uCCGGUcACGuGGAUUCUGAaaCUcgCCCu -3'
miRNA:   3'- -GGUCA-UGCuCCUGGGACUg-GAuaGGG- -5'
19657 5' -53.9 NC_004686.1 + 12586 0.68 0.725218
Target:  5'- aCCAGUGCGAccgccuaGACCCguUGAUCcg-CCCa -3'
miRNA:   3'- -GGUCAUGCUc------CUGGG--ACUGGauaGGG- -5'
19657 5' -53.9 NC_004686.1 + 15640 0.68 0.714619
Target:  5'- uCCGGUG-GAGGAaCCUGACCcggagccgaAUCCUg -3'
miRNA:   3'- -GGUCAUgCUCCUgGGACUGGa--------UAGGG- -5'
19657 5' -53.9 NC_004686.1 + 39484 0.68 0.714619
Target:  5'- aCCAGaacUGCGAGGugCCguuaaUGAUCag-CCCa -3'
miRNA:   3'- -GGUC---AUGCUCCugGG-----ACUGGauaGGG- -5'
19657 5' -53.9 NC_004686.1 + 11137 0.69 0.686716
Target:  5'- gCCAGUguuugGCGAGGAUCUgucggcaguagggguUgauuucGACCUGUCCUa -3'
miRNA:   3'- -GGUCA-----UGCUCCUGGG---------------A------CUGGAUAGGG- -5'
19657 5' -53.9 NC_004686.1 + 3292 0.69 0.626764
Target:  5'- aUCAGgcgGCGAGccaugcgccgcauGAUCCUGGCCg--CCCg -3'
miRNA:   3'- -GGUCa--UGCUC-------------CUGGGACUGGauaGGG- -5'
19657 5' -53.9 NC_004686.1 + 23372 0.72 0.482993
Target:  5'- gCAGUACGAuguugacaccaauguGGACaCCUaGACCUGgagcagCCCg -3'
miRNA:   3'- gGUCAUGCU---------------CCUG-GGA-CUGGAUa-----GGG- -5'
19657 5' -53.9 NC_004686.1 + 47627 0.73 0.449135
Target:  5'- aCCGGUACGGGGAUCCgacACCggagCCg -3'
miRNA:   3'- -GGUCAUGCUCCUGGGac-UGGaua-GGg -5'
19657 5' -53.9 NC_004686.1 + 5010 0.74 0.401838
Target:  5'- gCAGUACau-GACCCUGACCgc-CCCg -3'
miRNA:   3'- gGUCAUGcucCUGGGACUGGauaGGG- -5'
19657 5' -53.9 NC_004686.1 + 37657 0.76 0.273375
Target:  5'- cCUGGUAUGGGGACaCUGGCCggAUCCUg -3'
miRNA:   3'- -GGUCAUGCUCCUGgGACUGGa-UAGGG- -5'
19657 5' -53.9 NC_004686.1 + 13187 1.13 0.00094
Target:  5'- uCCAGUACGAGGACCCUGACCUAUCCCc -3'
miRNA:   3'- -GGUCAUGCUCCUGGGACUGGAUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.