miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19658 3' -60.1 NC_004686.1 + 51101 0.66 0.535516
Target:  5'- aCCuuGcgGGGGAug---GCGGUGaCGGg -3'
miRNA:   3'- -GGggCuaCCCCUuccuaCGCCGC-GCC- -5'
19658 3' -60.1 NC_004686.1 + 33635 0.66 0.525412
Target:  5'- gCCgCCGGUGauGGuGAGGGcgGCuGCgGCGGg -3'
miRNA:   3'- -GG-GGCUAC--CC-CUUCCuaCGcCG-CGCC- -5'
19658 3' -60.1 NC_004686.1 + 22329 0.66 0.525412
Target:  5'- gCCCCGccgguaAUGGcGGGuucGGAUcggcggGCGGCaGCGGu -3'
miRNA:   3'- -GGGGC------UACC-CCUu--CCUA------CGCCG-CGCC- -5'
19658 3' -60.1 NC_004686.1 + 26223 0.66 0.515382
Target:  5'- cCCCCaGGUGccugucucagccGGGGucGGUGUGGCgGCGGc -3'
miRNA:   3'- -GGGG-CUAC------------CCCUucCUACGCCG-CGCC- -5'
19658 3' -60.1 NC_004686.1 + 22591 0.66 0.504438
Target:  5'- cCCCUGGgguccGGGAAGcGUGCccgcaagGGUGCGGg -3'
miRNA:   3'- -GGGGCUac---CCCUUCcUACG-------CCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 24464 0.66 0.48578
Target:  5'- aUUCGGUGGGGAuugucgcggcugaGGGGUcguugacguugcauuCGGCGCGGc -3'
miRNA:   3'- gGGGCUACCCCU-------------UCCUAc--------------GCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 3358 0.67 0.466501
Target:  5'- uCCCCGAUGaGuGGAAGucgaucGAUGCGaaGUgGCGGg -3'
miRNA:   3'- -GGGGCUAC-C-CCUUC------CUACGC--CG-CGCC- -5'
19658 3' -60.1 NC_004686.1 + 2871 0.67 0.466501
Target:  5'- aCCCaUGAUGGGGuugcAGGAcGCcggGGUGCGu -3'
miRNA:   3'- -GGG-GCUACCCCu---UCCUaCG---CCGCGCc -5'
19658 3' -60.1 NC_004686.1 + 39222 0.67 0.457011
Target:  5'- cCCCCGuUGaGGuGGAGaagGUGGCGUGGc -3'
miRNA:   3'- -GGGGCuAC-CC-CUUCcuaCGCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 39647 0.67 0.442046
Target:  5'- gCUCCGAccgcacagugucacGGGuGAGGGUGCGGCaCGGc -3'
miRNA:   3'- -GGGGCUa-------------CCCcUUCCUACGCCGcGCC- -5'
19658 3' -60.1 NC_004686.1 + 47294 0.68 0.420129
Target:  5'- aUCCGcgGGcGAGGaGGU-CGGCGCGGa -3'
miRNA:   3'- gGGGCuaCCcCUUC-CUAcGCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 17756 0.68 0.411193
Target:  5'- gUCCGccUGGGcGuGGGGUGCGGCGagucCGGg -3'
miRNA:   3'- gGGGCu-ACCC-CuUCCUACGCCGC----GCC- -5'
19658 3' -60.1 NC_004686.1 + 39362 0.69 0.35207
Target:  5'- gCCCUGucuacGGagauccuGGAGGAaGCGGCGCGGa -3'
miRNA:   3'- -GGGGCua---CCc------CUUCCUaCGCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 50478 0.69 0.336321
Target:  5'- aCCCUGucggagcUGGaGAAGGAUGCguGGCGuCGGa -3'
miRNA:   3'- -GGGGCu------ACCcCUUCCUACG--CCGC-GCC- -5'
19658 3' -60.1 NC_004686.1 + 27322 0.69 0.336321
Target:  5'- aCCCCG-UGGGGuGGGAUcggGUucucccagGGCGCGa -3'
miRNA:   3'- -GGGGCuACCCCuUCCUA---CG--------CCGCGCc -5'
19658 3' -60.1 NC_004686.1 + 18919 0.69 0.331698
Target:  5'- gCCCUGcgacguaaguguucaGUGGGuuGGAGGGUccCGGCGCGGg -3'
miRNA:   3'- -GGGGC---------------UACCC--CUUCCUAc-GCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 37210 0.7 0.299229
Target:  5'- gUCUCGGUGGGuGAcauuGGuccCGGCGCGGg -3'
miRNA:   3'- -GGGGCUACCC-CUu---CCuacGCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 51509 0.77 0.110567
Target:  5'- gCUCGuGUGGGGGcguGGAUcGCGGCGUGGg -3'
miRNA:   3'- gGGGC-UACCCCUu--CCUA-CGCCGCGCC- -5'
19658 3' -60.1 NC_004686.1 + 13447 1.11 0.000297
Target:  5'- uCCCCGAUGGGGAAGGAUGCGGCGCGGa -3'
miRNA:   3'- -GGGGCUACCCCUUCCUACGCCGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.