miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19658 5' -56.7 NC_004686.1 + 44828 0.68 0.551784
Target:  5'- -uCUGgGACGUgGCCCCauuacaucguCACCGGUGGa -3'
miRNA:   3'- acGGCgUUGUAgUGGGG----------GUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 28984 0.68 0.551784
Target:  5'- cUGCCGguACAagGCUUCCacGCCGGUGu -3'
miRNA:   3'- -ACGGCguUGUagUGGGGG--UGGCUACc -5'
19658 5' -56.7 NC_004686.1 + 6832 0.68 0.541204
Target:  5'- aGgCGCAACG-CGuuUCUCCACCGAUGa -3'
miRNA:   3'- aCgGCGUUGUaGU--GGGGGUGGCUACc -5'
19658 5' -56.7 NC_004686.1 + 49891 0.68 0.527553
Target:  5'- gGCCGCGGCGaacgaucaucgagaUCACCgCgAUCGGUGa -3'
miRNA:   3'- aCGGCGUUGU--------------AGUGGgGgUGGCUACc -5'
19658 5' -56.7 NC_004686.1 + 43863 0.68 0.520256
Target:  5'- gGCCGcCGGCAUagcCGCCCCUugCGGc-- -3'
miRNA:   3'- aCGGC-GUUGUA---GUGGGGGugGCUacc -5'
19658 5' -56.7 NC_004686.1 + 8372 0.68 0.520256
Target:  5'- cGCCGCucauGACAUcCGCCCCCGCg----- -3'
miRNA:   3'- aCGGCG----UUGUA-GUGGGGGUGgcuacc -5'
19658 5' -56.7 NC_004686.1 + 14866 0.68 0.519217
Target:  5'- aGCgGCGAgGUCucgggcuuCCUCCACCGAaucgagaUGGg -3'
miRNA:   3'- aCGgCGUUgUAGu-------GGGGGUGGCU-------ACC- -5'
19658 5' -56.7 NC_004686.1 + 54072 0.68 0.509901
Target:  5'- cGCCGCGACAUCGCgUuggcgUUGCCGuucGUGGa -3'
miRNA:   3'- aCGGCGUUGUAGUGgG-----GGUGGC---UACC- -5'
19658 5' -56.7 NC_004686.1 + 33891 0.68 0.509901
Target:  5'- gGCCGUcGCugguuccguuGUUGCCgCCGCUGAUGGu -3'
miRNA:   3'- aCGGCGuUG----------UAGUGGgGGUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 49616 0.69 0.479382
Target:  5'- gGCUGCGACuggCGCCCCUcguuugAUCGAaccUGGg -3'
miRNA:   3'- aCGGCGUUGua-GUGGGGG------UGGCU---ACC- -5'
19658 5' -56.7 NC_004686.1 + 42522 0.69 0.473385
Target:  5'- cGCCGCGGCugaaucaacugcacaGUCACCCCUcCCucgGGa -3'
miRNA:   3'- aCGGCGUUG---------------UAGUGGGGGuGGcuaCC- -5'
19658 5' -56.7 NC_004686.1 + 36229 0.69 0.469408
Target:  5'- cGgCGuCAGCggCACCCCCGCa-GUGGa -3'
miRNA:   3'- aCgGC-GUUGuaGUGGGGGUGgcUACC- -5'
19658 5' -56.7 NC_004686.1 + 34361 0.69 0.469408
Target:  5'- aGCCGCcGCccgCGCCCgcgCCGCCGA-GGc -3'
miRNA:   3'- aCGGCGuUGua-GUGGG---GGUGGCUaCC- -5'
19658 5' -56.7 NC_004686.1 + 34567 0.69 0.447848
Target:  5'- gGCCGCAuaagaaaaGCCCCCACCuGUGu -3'
miRNA:   3'- aCGGCGUuguag---UGGGGGUGGcUACc -5'
19658 5' -56.7 NC_004686.1 + 40513 0.7 0.440145
Target:  5'- cUGCUGCGGCGUCAgCCgggCCACCGcaucgcGGg -3'
miRNA:   3'- -ACGGCGUUGUAGUgGG---GGUGGCua----CC- -5'
19658 5' -56.7 NC_004686.1 + 42697 0.7 0.421223
Target:  5'- gGUCGau-CGUCaACCCgCCAUCGGUGGg -3'
miRNA:   3'- aCGGCguuGUAG-UGGG-GGUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 12699 0.71 0.388435
Target:  5'- gGCCGCAAUG-CACCCCUugUGGgcacguugcaggcacUGGa -3'
miRNA:   3'- aCGGCGUUGUaGUGGGGGugGCU---------------ACC- -5'
19658 5' -56.7 NC_004686.1 + 27510 0.71 0.384896
Target:  5'- cGCUGCAacGCAUCAUUCaCCGCUG-UGGa -3'
miRNA:   3'- aCGGCGU--UGUAGUGGG-GGUGGCuACC- -5'
19658 5' -56.7 NC_004686.1 + 51988 0.71 0.359047
Target:  5'- -uCCGCGACAUCgacACCCUgACCGcgcaGUGGg -3'
miRNA:   3'- acGGCGUUGUAG---UGGGGgUGGC----UACC- -5'
19658 5' -56.7 NC_004686.1 + 54108 0.71 0.359047
Target:  5'- cGCCGCAuACAcCGCCCCCGac-AUGGa -3'
miRNA:   3'- aCGGCGU-UGUaGUGGGGGUggcUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.