miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19659 3' -56.3 NC_004686.1 + 19418 0.66 0.715288
Target:  5'- gCCGGGUG-GuGGCGGUaaUGGUgGUGaCCg -3'
miRNA:   3'- -GGCUCACaCuCCGCUAg-ACCG-CAC-GG- -5'
19659 3' -56.3 NC_004686.1 + 48146 0.66 0.683477
Target:  5'- uCCGcGUGUccugGAGGCGGUgU--CGUGCCg -3'
miRNA:   3'- -GGCuCACA----CUCCGCUAgAccGCACGG- -5'
19659 3' -56.3 NC_004686.1 + 6042 0.67 0.640447
Target:  5'- aCGGcGUG-GAGGUGGUgUGGUGU-CCg -3'
miRNA:   3'- gGCU-CACaCUCCGCUAgACCGCAcGG- -5'
19659 3' -56.3 NC_004686.1 + 19206 0.67 0.629647
Target:  5'- aCGGGUGUG-GGCGGcaaUGGUG-GCg -3'
miRNA:   3'- gGCUCACACuCCGCUag-ACCGCaCGg -5'
19659 3' -56.3 NC_004686.1 + 26242 0.67 0.629647
Target:  5'- gCCGGGgucgGUGuGGCGG-C-GGCuUGCCg -3'
miRNA:   3'- -GGCUCa---CACuCCGCUaGaCCGcACGG- -5'
19659 3' -56.3 NC_004686.1 + 35985 0.67 0.626407
Target:  5'- aCGAGUGaGAGGCGuauugaugaguugcGUCgugcUGGUGUGUUg -3'
miRNA:   3'- gGCUCACaCUCCGC--------------UAG----ACCGCACGG- -5'
19659 3' -56.3 NC_004686.1 + 34943 0.67 0.618849
Target:  5'- aUGuGUGUGAGGCGGUCgGGaucaagGCa -3'
miRNA:   3'- gGCuCACACUCCGCUAGaCCgca---CGg -5'
19659 3' -56.3 NC_004686.1 + 180 0.68 0.597295
Target:  5'- gCGGGUGccGGGCGGgugGGCGacggUGCCg -3'
miRNA:   3'- gGCUCACacUCCGCUagaCCGC----ACGG- -5'
19659 3' -56.3 NC_004686.1 + 25131 0.69 0.533569
Target:  5'- gCGAGUugGUGAcGGagaaGAUUcGGCGUGCUg -3'
miRNA:   3'- gGCUCA--CACU-CCg---CUAGaCCGCACGG- -5'
19659 3' -56.3 NC_004686.1 + 8123 0.69 0.512835
Target:  5'- -aGAGaucgGUGAGGUGAcCUGGC-UGUCg -3'
miRNA:   3'- ggCUCa---CACUCCGCUaGACCGcACGG- -5'
19659 3' -56.3 NC_004686.1 + 4121 0.7 0.462574
Target:  5'- cCCG-GcGUGGGGUGGUCaaGCGUuGCCg -3'
miRNA:   3'- -GGCuCaCACUCCGCUAGacCGCA-CGG- -5'
19659 3' -56.3 NC_004686.1 + 3270 0.71 0.379215
Target:  5'- gUCGAGguggcGUGAcacGGCGAUCaGGCGgcgaGCCa -3'
miRNA:   3'- -GGCUCa----CACU---CCGCUAGaCCGCa---CGG- -5'
19659 3' -56.3 NC_004686.1 + 846 0.71 0.379215
Target:  5'- cCUGGGUuugcGUGAGGaCGGcacgCUGGCGUGUg -3'
miRNA:   3'- -GGCUCA----CACUCC-GCUa---GACCGCACGg -5'
19659 3' -56.3 NC_004686.1 + 13766 1.14 0.000415
Target:  5'- gCCGAGUGUGAGGCGAUCUGGCGUGCCa -3'
miRNA:   3'- -GGCUCACACUCCGCUAGACCGCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.