Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19659 | 3' | -56.3 | NC_004686.1 | + | 180 | 0.68 | 0.597295 |
Target: 5'- gCGGGUGccGGGCGGgugGGCGacggUGCCg -3' miRNA: 3'- gGCUCACacUCCGCUagaCCGC----ACGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 846 | 0.71 | 0.379215 |
Target: 5'- cCUGGGUuugcGUGAGGaCGGcacgCUGGCGUGUg -3' miRNA: 3'- -GGCUCA----CACUCC-GCUa---GACCGCACGg -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 3270 | 0.71 | 0.379215 |
Target: 5'- gUCGAGguggcGUGAcacGGCGAUCaGGCGgcgaGCCa -3' miRNA: 3'- -GGCUCa----CACU---CCGCUAGaCCGCa---CGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 4121 | 0.7 | 0.462574 |
Target: 5'- cCCG-GcGUGGGGUGGUCaaGCGUuGCCg -3' miRNA: 3'- -GGCuCaCACUCCGCUAGacCGCA-CGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 6042 | 0.67 | 0.640447 |
Target: 5'- aCGGcGUG-GAGGUGGUgUGGUGU-CCg -3' miRNA: 3'- gGCU-CACaCUCCGCUAgACCGCAcGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 8123 | 0.69 | 0.512835 |
Target: 5'- -aGAGaucgGUGAGGUGAcCUGGC-UGUCg -3' miRNA: 3'- ggCUCa---CACUCCGCUaGACCGcACGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 13766 | 1.14 | 0.000415 |
Target: 5'- gCCGAGUGUGAGGCGAUCUGGCGUGCCa -3' miRNA: 3'- -GGCUCACACUCCGCUAGACCGCACGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 19206 | 0.67 | 0.629647 |
Target: 5'- aCGGGUGUG-GGCGGcaaUGGUG-GCg -3' miRNA: 3'- gGCUCACACuCCGCUag-ACCGCaCGg -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 19418 | 0.66 | 0.715288 |
Target: 5'- gCCGGGUG-GuGGCGGUaaUGGUgGUGaCCg -3' miRNA: 3'- -GGCUCACaCuCCGCUAg-ACCG-CAC-GG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 25131 | 0.69 | 0.533569 |
Target: 5'- gCGAGUugGUGAcGGagaaGAUUcGGCGUGCUg -3' miRNA: 3'- gGCUCA--CACU-CCg---CUAGaCCGCACGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 26242 | 0.67 | 0.629647 |
Target: 5'- gCCGGGgucgGUGuGGCGG-C-GGCuUGCCg -3' miRNA: 3'- -GGCUCa---CACuCCGCUaGaCCGcACGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 34943 | 0.67 | 0.618849 |
Target: 5'- aUGuGUGUGAGGCGGUCgGGaucaagGCa -3' miRNA: 3'- gGCuCACACUCCGCUAGaCCgca---CGg -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 35985 | 0.67 | 0.626407 |
Target: 5'- aCGAGUGaGAGGCGuauugaugaguugcGUCgugcUGGUGUGUUg -3' miRNA: 3'- gGCUCACaCUCCGC--------------UAG----ACCGCACGG- -5' |
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19659 | 3' | -56.3 | NC_004686.1 | + | 48146 | 0.66 | 0.683477 |
Target: 5'- uCCGcGUGUccugGAGGCGGUgU--CGUGCCg -3' miRNA: 3'- -GGCuCACA----CUCCGCUAgAccGCACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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