miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19659 5' -52 NC_004686.1 + 28092 0.66 0.866595
Target:  5'- uGGAAA-GCCAcguuGAGCAucgcuggcGGUGCUGCu -3'
miRNA:   3'- gUCUUUgCGGUu---CUCGU--------CUACGACGc -5'
19659 5' -52 NC_004686.1 + 3719 0.66 0.84943
Target:  5'- uGGAGACGUgGAGcgaagccgccauGGCGGcgGCgGCGg -3'
miRNA:   3'- gUCUUUGCGgUUC------------UCGUCuaCGaCGC- -5'
19659 5' -52 NC_004686.1 + 50186 0.66 0.840476
Target:  5'- gCGGcGAUGUCAucGGGCAGGU-CUGCGg -3'
miRNA:   3'- -GUCuUUGCGGUu-CUCGUCUAcGACGC- -5'
19659 5' -52 NC_004686.1 + 4565 0.66 0.830356
Target:  5'- uCAGGGACGUCGgcgagguGGGcGUAGAUGuCUGCu -3'
miRNA:   3'- -GUCUUUGCGGU-------UCU-CGUCUAC-GACGc -5'
19659 5' -52 NC_004686.1 + 12361 0.67 0.802416
Target:  5'- ---cGACGaCCGGuGAGCAGAUGgaGCa -3'
miRNA:   3'- gucuUUGC-GGUU-CUCGUCUACgaCGc -5'
19659 5' -52 NC_004686.1 + 23874 0.68 0.761305
Target:  5'- --aGGACGCCGuggcuGAGgGGcUGCUGCGa -3'
miRNA:   3'- gucUUUGCGGUu----CUCgUCuACGACGC- -5'
19659 5' -52 NC_004686.1 + 152 0.68 0.754923
Target:  5'- -cGAAcCGCCAGGcgacgcggccggguuGGCGGGUGCcggGCGg -3'
miRNA:   3'- guCUUuGCGGUUC---------------UCGUCUACGa--CGC- -5'
19659 5' -52 NC_004686.1 + 16453 0.68 0.739848
Target:  5'- aGGAGGCGCCGucgucGAGCAGGcggGCcGCc -3'
miRNA:   3'- gUCUUUGCGGUu----CUCGUCUa--CGaCGc -5'
19659 5' -52 NC_004686.1 + 42711 0.68 0.728938
Target:  5'- -----cCGCCAucgguGGGGguGAUGUUGCGg -3'
miRNA:   3'- gucuuuGCGGU-----UCUCguCUACGACGC- -5'
19659 5' -52 NC_004686.1 + 23830 0.7 0.661741
Target:  5'- gCGGAGA-GCCGAGAaggcGCAcGUGCUGCu -3'
miRNA:   3'- -GUCUUUgCGGUUCU----CGUcUACGACGc -5'
19659 5' -52 NC_004686.1 + 1538 0.7 0.661741
Target:  5'- cCAGAAugcaGCCGGGccGCAGAUGCgGCu -3'
miRNA:   3'- -GUCUUug--CGGUUCu-CGUCUACGaCGc -5'
19659 5' -52 NC_004686.1 + 32566 0.7 0.650367
Target:  5'- aCAGAGACGCCAccgguGGuGUAGccGUUGCc -3'
miRNA:   3'- -GUCUUUGCGGU-----UCuCGUCuaCGACGc -5'
19659 5' -52 NC_004686.1 + 33097 0.7 0.649229
Target:  5'- uGGgcACGCCGgugaaugAGAucGCuGAUGCUGCGa -3'
miRNA:   3'- gUCuuUGCGGU-------UCU--CGuCUACGACGC- -5'
19659 5' -52 NC_004686.1 + 13258 0.72 0.537392
Target:  5'- gAGAGcCGCCGAGAGCccGggGcCUGCGg -3'
miRNA:   3'- gUCUUuGCGGUUCUCGu-CuaC-GACGC- -5'
19659 5' -52 NC_004686.1 + 13801 1.08 0.002137
Target:  5'- gCAGAAACGCCAAGAGCAGAUGCUGCGc -3'
miRNA:   3'- -GUCUUUGCGGUUCUCGUCUACGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.