Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19659 | 5' | -52 | NC_004686.1 | + | 28092 | 0.66 | 0.866595 |
Target: 5'- uGGAAA-GCCAcguuGAGCAucgcuggcGGUGCUGCu -3' miRNA: 3'- gUCUUUgCGGUu---CUCGU--------CUACGACGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 3719 | 0.66 | 0.84943 |
Target: 5'- uGGAGACGUgGAGcgaagccgccauGGCGGcgGCgGCGg -3' miRNA: 3'- gUCUUUGCGgUUC------------UCGUCuaCGaCGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 50186 | 0.66 | 0.840476 |
Target: 5'- gCGGcGAUGUCAucGGGCAGGU-CUGCGg -3' miRNA: 3'- -GUCuUUGCGGUu-CUCGUCUAcGACGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 4565 | 0.66 | 0.830356 |
Target: 5'- uCAGGGACGUCGgcgagguGGGcGUAGAUGuCUGCu -3' miRNA: 3'- -GUCUUUGCGGU-------UCU-CGUCUAC-GACGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 12361 | 0.67 | 0.802416 |
Target: 5'- ---cGACGaCCGGuGAGCAGAUGgaGCa -3' miRNA: 3'- gucuUUGC-GGUU-CUCGUCUACgaCGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 23874 | 0.68 | 0.761305 |
Target: 5'- --aGGACGCCGuggcuGAGgGGcUGCUGCGa -3' miRNA: 3'- gucUUUGCGGUu----CUCgUCuACGACGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 152 | 0.68 | 0.754923 |
Target: 5'- -cGAAcCGCCAGGcgacgcggccggguuGGCGGGUGCcggGCGg -3' miRNA: 3'- guCUUuGCGGUUC---------------UCGUCUACGa--CGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 16453 | 0.68 | 0.739848 |
Target: 5'- aGGAGGCGCCGucgucGAGCAGGcggGCcGCc -3' miRNA: 3'- gUCUUUGCGGUu----CUCGUCUa--CGaCGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 42711 | 0.68 | 0.728938 |
Target: 5'- -----cCGCCAucgguGGGGguGAUGUUGCGg -3' miRNA: 3'- gucuuuGCGGU-----UCUCguCUACGACGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 23830 | 0.7 | 0.661741 |
Target: 5'- gCGGAGA-GCCGAGAaggcGCAcGUGCUGCu -3' miRNA: 3'- -GUCUUUgCGGUUCU----CGUcUACGACGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 1538 | 0.7 | 0.661741 |
Target: 5'- cCAGAAugcaGCCGGGccGCAGAUGCgGCu -3' miRNA: 3'- -GUCUUug--CGGUUCu-CGUCUACGaCGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 32566 | 0.7 | 0.650367 |
Target: 5'- aCAGAGACGCCAccgguGGuGUAGccGUUGCc -3' miRNA: 3'- -GUCUUUGCGGU-----UCuCGUCuaCGACGc -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 33097 | 0.7 | 0.649229 |
Target: 5'- uGGgcACGCCGgugaaugAGAucGCuGAUGCUGCGa -3' miRNA: 3'- gUCuuUGCGGU-------UCU--CGuCUACGACGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 13258 | 0.72 | 0.537392 |
Target: 5'- gAGAGcCGCCGAGAGCccGggGcCUGCGg -3' miRNA: 3'- gUCUUuGCGGUUCUCGu-CuaC-GACGC- -5' |
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19659 | 5' | -52 | NC_004686.1 | + | 13801 | 1.08 | 0.002137 |
Target: 5'- gCAGAAACGCCAAGAGCAGAUGCUGCGc -3' miRNA: 3'- -GUCUUUGCGGUUCUCGUCUACGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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