miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19661 3' -45.3 NC_004686.1 + 37726 0.66 0.998699
Target:  5'- aCCGGaccgGggCGUcgUGGAGCG-CCAu- -3'
miRNA:   3'- -GGCCa---CaaGUAuaACCUUGUaGGUug -5'
19661 3' -45.3 NC_004686.1 + 25784 0.66 0.998671
Target:  5'- aCCGG-GUUCuca-UGGAcccgaacACAUCCGAg -3'
miRNA:   3'- -GGCCaCAAGuauaACCU-------UGUAGGUUg -5'
19661 3' -45.3 NC_004686.1 + 25741 0.67 0.997111
Target:  5'- gCCGGUGcgCAguaugcGUUGGAucGCAUCgUGGCg -3'
miRNA:   3'- -GGCCACaaGUa-----UAACCU--UGUAG-GUUG- -5'
19661 3' -45.3 NC_004686.1 + 39826 0.67 0.996528
Target:  5'- cCCGG---UCGUGgcUGGGACcgCCGGCa -3'
miRNA:   3'- -GGCCacaAGUAUa-ACCUUGuaGGUUG- -5'
19661 3' -45.3 NC_004686.1 + 9963 0.67 0.996465
Target:  5'- gUCGGuUGUUCGUcccgAUUGGAucuGCAccgggugUCCGGCu -3'
miRNA:   3'- -GGCC-ACAAGUA----UAACCU---UGU-------AGGUUG- -5'
19661 3' -45.3 NC_004686.1 + 12366 0.67 0.995069
Target:  5'- aCCGGUGagCAga-UGGAGCAgcaagCAGCg -3'
miRNA:   3'- -GGCCACaaGUauaACCUUGUag---GUUG- -5'
19661 3' -45.3 NC_004686.1 + 411 0.67 0.994172
Target:  5'- gCGGUGUUgGUAggcguagGGGcguugGCGUCCGAg -3'
miRNA:   3'- gGCCACAAgUAUaa-----CCU-----UGUAGGUUg -5'
19661 3' -45.3 NC_004686.1 + 11100 0.68 0.992926
Target:  5'- aCGGUGgugcguacaucgUCAUGUcggGGGACGUgCGGCc -3'
miRNA:   3'- gGCCACa-----------AGUAUAa--CCUUGUAgGUUG- -5'
19661 3' -45.3 NC_004686.1 + 3511 0.68 0.98919
Target:  5'- gCUGGUGgagCGg---GGAACGcgaUCCAACa -3'
miRNA:   3'- -GGCCACaa-GUauaaCCUUGU---AGGUUG- -5'
19661 3' -45.3 NC_004686.1 + 18927 0.69 0.983644
Target:  5'- aCGuaaGUGUUCAguggGUUGGAGgGUCCcGGCg -3'
miRNA:   3'- gGC---CACAAGUa---UAACCUUgUAGG-UUG- -5'
19661 3' -45.3 NC_004686.1 + 11860 0.7 0.966463
Target:  5'- gCCGGUGa-CAUGg-GGGACAUgCAGCa -3'
miRNA:   3'- -GGCCACaaGUAUaaCCUUGUAgGUUG- -5'
19661 3' -45.3 NC_004686.1 + 48962 0.76 0.78269
Target:  5'- gCCGGUGagCAcacccGGGGCGUCCGGCa -3'
miRNA:   3'- -GGCCACaaGUauaa-CCUUGUAGGUUG- -5'
19661 3' -45.3 NC_004686.1 + 14575 1.15 0.005652
Target:  5'- uCCGGUGUUCAUAUUGGAACAUCCAACg -3'
miRNA:   3'- -GGCCACAAGUAUAACCUUGUAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.